Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2722g00039 ATGATGCAGCTTGCCTATCATGGCTTCTTGATGAATCTCGTATGCTTTGCATTAACATTGATCCTATTGCATGGAGGAGAACCAAGGGTAGGAGCTTCAGCTTCCACTCATGATGTCGTCAAAATCGGTGCCATTTTCACTTTAAAAACTATAAACGGACGTGTTTCCAAAATGGCCATCGAAGCTGCTGAGAAAGATGTGAATTCTGATCCTCGCATCCTTGGTGGACGTAAATTATCCATAACCATTCATGATTCCAACTTCAGTGGTTTTCTTGGCTTCATGGGGGCCCTTAAGTTCTTGATGACTGACACTGTAGCTATAATTGGTCCACAAAGTTCAGTAATGGCTCATACTCTTTCGCATCTTGCAAATGAGCTGCATGTTCCTCTATTGTCCTTCATTGCTCTGGATCCCACCTTAACACCTCTTCAGCATCCTTATTTTGTACAAACAGCACCCAATGATCAGTTCCAAATGACTGCAGTTGCGGACATAATTAGTTACTTTCGTTGGAAAGAAATCATTGTAGTTTATAGTGATGATGATCAGAGTCGAAATGGGATAACTGTATTAGGGGACAAACTTGCAGAGAGGCGCTGTAAGATATCTTACAAAGCAGCACTGCCACCTGATCCAACCGCAAGTCCAAGTGATGTTGCTGATCAGTTGGTGAAGATTCAAAGTGTGGAAGCTCGAATAATTGTTTTACACACCTTCACAAAAACAGGTGTCTTGGTTTTTGATGTGGCTCAAAAACTAGGGATGATAAGCAAAGGGTATGTTTGGATAGCTACTGCTTGGTTATCAACTATTTTGGATTCAAGTTCAAATTCACTACTACCTTTAAATTCTTATAACACAATTCAAGGAGTACTTACTCTTCGCCCTCACACCCCTCAATCAAGAAAAAAAGAGGTATTTACCTCAAGGTGGAAACAGATAAGTAATGGCTCATTTGGGTTAAACCCATATGGACTCTATGCTTATGATTCTGTTTGGATGATTGCTTATGCACTAAAATCATTTTTTGATCAGAATGGTACCATTTCATTCTCTAATAATACAAATTTAATTGGTATGAGGGGAGATACTCTTGATCTTGGTGCTTTGAGCGTTTTTGATGGAGGGAAACAGTTACTTGATAACATATTGCACATTAATATGACTGGATTGACTGGACCTATTCAATTTGGTTCAGATAGATCCCCTTTACATCCATCATATGACATCCTCAATGTAATTGCTACTGGTTATAGGAGTATTGGATACTGGTCTAATTATTCTGGTCTCTCTGTGATAACCCCTGAGAAACTTTACACAAAGCCTGCCAATCGTTCAATTTCAAACCAACATCTATATGATGTCATATGGCCTGGAAATACAACAGAAAAGCCTCGTGGATGGGTTCTAAATAATGGAAGGCAACTCAGAATTGGAGTCCCCAACAGAGTTAGTTACCAGGACATGGTCTCACAAATAAATGGCACCAATGCAGTTCACGGATATTGCATAGATATATTCCTGGCAGCCATAAAATTGCTTCCATATGCAGTTCAACATAGGTTCATTCTGTTTGGAGATGGGCATAAGAACCCAAGCTACAATGATCTTGTCAATATGATTACTGCTGATCTACAGGCTTTTGATGCTGCTATAGGTGACATTACAATTGTCACTGACCGAACTAGGATTGTTGATTTTACTCAACCATATATAGAGTCAGGGCTAGTTGTGGTTGCTCCAGTAAAAAGATTGAAGTCGAGTGCTTGGGCTTTCTTGCGACCATTTACTCCACTCATGTGGGGTGTCACTGCACTTTTTTTCCTTATTGTTGGAGCAGTGGTGTGGATTCTTGAACATAGAACAAATGATGAGTTTCGGGGGCCTCCAAAGAAACAGATAGCTACAATTCTTTGGTTTAGTTTCTCAACTCTGTTCTTTTCTCACAGAGAAAACATAGTTAGTCCACTTGGTCGTATTGTATTGATAATCTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTACACTGCAAGCTTGACATCAATTCTCACTGTACAACAGCTGTCCTCACCCATAACAGGAATTGATACCTTGATATCCAGCAATAAACCTATAGGGTTCCAAGTAGGTTCATTTGCTGAAAACTATTTGACCAAGGAACTCAACATCCCAAAACGTAGACTTGTTCCTCTTGGCTCACCAGAAGAATATGCTATTGCTCTTGAGAGGGGAACTGTTGCAGCTGTGGTAGATGAAAGGCCATATGTAGAACTCTTCCTGTCAAACCACTGCAAATTCTCAATTAGGGGCCAAGAGTTCACCAAAGGTGGATGGGGATTTGCATTCCCTAGGGACTCTCCTTTAGCAATTGATATGTCAACTGCTATTCTGAATCTATCTGAGAATGGTGAGCTTCAGAGGATCCATGAAAAGTGGCTTTCAAAAAAGGCTTGTGATTTACATAGTACTGATAATGAGCAGCTTCAATTAAATAGCTTCCGGGGCCTGTTTCTAATCTGTGGGATAGCATTTTTCCTGGCCCTTCTTATCTACTTTATTTCAATGGTACACCAATTCTGTCAAAACTCCCCTGAAAAATCTGATCCTTCTAATGGTTGCAGCTCACGCTCTGCACGCATCCAGACATTTCTAAATTTTGTTGATGAGAAAGAAGACATATCACACAAGAAGTCTAAAAGAAAACTTGAGGATATTTCTTCAATTGCTTATTCCAAAGAAAATCATTTAAGGAGCATATCCAAGAGAGTACAAATGGACATTTCCCAAGAGGCTCCTTTTGGTTAA 2811 0.3981 MMQLAYHGFLMNLVCFALTLILLHGGEPRVGASASTHDVVKIGAIFTLKTINGRVSKMAIEAAEKDVNSDPRILGGRKLSITIHDSNFSGFLGFMGALKFLMTDTVAIIGPQSSVMAHTLSHLANELHVPLLSFIALDPTLTPLQHPYFVQTAPNDQFQMTAVADIISYFRWKEIIVVYSDDDQSRNGITVLGDKLAERRCKISYKAALPPDPTASPSDVADQLVKIQSVEARIIVLHTFTKTGVLVFDVAQKLGMISKGYVWIATAWLSTILDSSSNSLLPLNSYNTIQGVLTLRPHTPQSRKKEVFTSRWKQISNGSFGLNPYGLYAYDSVWMIAYALKSFFDQNGTISFSNNTNLIGMRGDTLDLGALSVFDGGKQLLDNILHINMTGLTGPIQFGSDRSPLHPSYDILNVIATGYRSIGYWSNYSGLSVITPEKLYTKPANRSISNQHLYDVIWPGNTTEKPRGWVLNNGRQLRIGVPNRVSYQDMVSQINGTNAVHGYCIDIFLAAIKLLPYAVQHRFILFGDGHKNPSYNDLVNMITADLQAFDAAIGDITIVTDRTRIVDFTQPYIESGLVVVAPVKRLKSSAWAFLRPFTPLMWGVTALFFLIVGAVVWILEHRTNDEFRGPPKKQIATILWFSFSTLFFSHRENIVSPLGRIVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDTLISSNKPIGFQVGSFAENYLTKELNIPKRRLVPLGSPEEYAIALERGTVAAVVDERPYVELFLSNHCKFSIRGQEFTKGGWGFAFPRDSPLAIDMSTAILNLSENGELQRIHEKWLSKKACDLHSTDNEQLQLNSFRGLFLICGIAFFLALLIYFISMVHQFCQNSPEKSDPSNGCSSRSARIQTFLNFVDEKEDISHKKSKRKLEDISSIAYSKENHLRSISKRVQMDISQEAPFG 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2722g00039 936 CDD GluR_Plant 475 815 - -
Gabi2722g00039 936 Gene3D - 744 780 - -
Gabi2722g00039 936 Gene3D - 590 721 - -
Gabi2722g00039 936 FunFam Glutamate receptor 155 317 - -
Gabi2722g00039 936 SUPERFAMILY Periplasmic binding protein-like II 471 817 - -
Gabi2722g00039 936 SMART GluR_14 478 817 IPR001320 GO:0015276|GO:0016020
Gabi2722g00039 936 FunFam Glutamate receptor 716 819 - -
Gabi2722g00039 936 SUPERFAMILY Periplasmic binding protein-like I 35 469 IPR028082 -
Gabi2722g00039 936 Pfam Receptor family ligand binding region 57 414 IPR001828 -
Gabi2722g00039 936 PIRSF IGluLR_plant 7 934 IPR017103 -
Gabi2722g00039 936 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 883 IPR015683 -
Gabi2722g00039 936 CDD PBP1_GABAb_receptor_plant 41 433 IPR044440 -
Gabi2722g00039 936 FunFam Glutamate receptor 472 590 - -
Gabi2722g00039 936 Pfam Bacterial extracellular solute-binding proteins, family 3 548 816 IPR001638 -
Gabi2722g00039 936 Gene3D - 58 406 - -
Gabi2722g00039 936 Gene3D - 155 431 - -
Gabi2722g00039 936 Gene3D - 479 589 - -
Gabi2722g00039 936 Gene3D - 781 814 - -
Gabi2722g00039 936 FunFam Glutamate receptor 590 720 - -
Gabi2722g00039 936 Pfam Ligand-gated ion channel 817 845 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2722g00039 Gabi-Chr2722 345057 350377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2722g00039 11 903 Ion Channels AT2G17260 61.810 0.0 1149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2722g00039 K05387 - qsu:112010597 1332.78