Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2722g00034 ATGGGCAACACATGCCGTGGATCTTTGAAAGGAAAATATATTCAGGGCTTCTCACAGCCCGAAGACCAATCCAAACGCACCAACACTCATTCTGATCGCTCCGATCCAGAACAACCCTCAACAAAACACAATCCCAATTCTGCAGACAACATTAACACCAACAACAACAACAACAATAGCAACAATCTACCTTTGAAGAAAGACATCATCATGCGACGAGGTCTTGACAACCAAGCTTATTATGTGTTGGGTCATAAGACTCCAAACATTCGTGATCTTTACACTCTTGGTCGTAAATTAGGACAGGGACAATTTGGGACCACTTATTTATGTACCGACAATTCGACCTCTGTTGAATATGCTTGCAAATCGATCTCCAAGAGGAAGTTGATTTCCAAGGAGGATGTGGAGGATGTTAGGAGGGAAATTCAGATAATGCACCATTTAGCTGGTCATAAGAACATTGTGACCATTAAGGGTGCTTATGAGGATCCACTTTATGTTCATATTGTCATGGAGCTTTGTTCTGGGGGTGAGTTGTTTGATCGCATCATCCAGAGGGGACACTATACCGAAAGGAAAGCTGCGGAATTGACCAAAATCATTGTTGGGGTTGTTGAGGCGTGTCATTCACTTGGGGTTATGCATAGAGATCTCAAGCCTGAAAACTTTTTGTTGGTTAATAAAGATGATGATTTCTCTCTTAAAGCTATTGACTTTGGCCTTTCTGTTTTCTTCAAACCAGGTCAAGTTTTCACTGATGTAGTTGGAAGCCCATACTATGTTGCTCCCGAGGTTCTCCTTAAGCATTATGGGCCTGAAGCAGATGTGTGGACAGCGGGGGTCATACTGTACATATTGCTTAGTGGTGTGCCACCATTTTGGGCAGAAACCCAGCAGGGTATATTTGATGCTGTGTTGAAGGGACATATAGATTTTGACTCAGACCCATGGCCTTTAATATCTGATAGCGCAAAAGATCTGATTAAAAAAATGCTGTCTTCTCGGCCTTCAGAACGGTTGACTGCTCATCAAGTGTTATGTCATCCTTGGATATGCGAAAATGGAGTTGCTCCGGACAGATCACTGGACCCTGCTGTTCTTTCTCGTCTCAAACAGTTTTCTGCAATGAATAAGCTAAAGAAGATGGCCCTGCGGGTGATTGCTGAAAGTTTATCTGAAGAGGAGATTGCTGGTTTGAGAGAAATGTTTCAGGCTATGGATACTGATAACAGTGGTGCAATCACTTTTGATGAACTCAAAGCTGGTCTAAGAAGATATGGGTCTACCCTTAAGGATACAGAAATACGTGATCTTATGGAAGCGGCTGATGTGGACAATAGTGGAACTATAGATTACGGGGAGTTTATTGCTGCTACAGTTCATCTCAACAAACTAGAGCGTGAGGAACATCTCATTGCAGCATTCCAATATTTTGACAAGGACGGCAGTGGTTATATTACAGTTGATGAACTTCAAGCAGCTTGTGCAGAACATAACATGACTGATGTTTTTCTTGAAGATATTATTAAGGAAGTTGATCAAGATAATGATGGAAGGATTGATTATGGTGAATTTGCTGCCATGATGCAAAAAGGCAATGCTGGAATTGGTAGGAGGACTATGCGCAACAGTCTGAATTTGAGCATGAGAGATGCACCAGGTGCTCATTAG 1674 0.4211 MGNTCRGSLKGKYIQGFSQPEDQSKRTNTHSDRSDPEQPSTKHNPNSADNINTNNNNNNSNNLPLKKDIIMRRGLDNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTDNSTSVEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQVFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSDPWPLISDSAKDLIKKMLSSRPSERLTAHQVLCHPWICENGVAPDRSLDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRRYGSTLKDTEIRDLMEAADVDNSGTIDYGEFIAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQAACAEHNMTDVFLEDIIKEVDQDNDGRIDYGEFAAMMQKGNAGIGRRTMRNSLNLSMRDAPGAH 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2722g00034 557 SMART efh_1 471 499 IPR002048 GO:0005509
Gabi2722g00034 557 SMART efh_1 505 533 IPR002048 GO:0005509
Gabi2722g00034 557 SMART efh_1 399 427 IPR002048 GO:0005509
Gabi2722g00034 557 SMART efh_1 435 463 IPR002048 GO:0005509
Gabi2722g00034 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Gabi2722g00034 557 MobiDBLite consensus disorder prediction 40 64 - -
Gabi2722g00034 557 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Gabi2722g00034 557 ProSiteProfiles EF-hand calcium-binding domain profile. 506 536 IPR002048 GO:0005509
Gabi2722g00034 557 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Gabi2722g00034 557 FunFam Calcium-dependent protein kinase 1 360 534 - -
Gabi2722g00034 557 ProSitePatterns EF-hand calcium-binding domain. 514 526 IPR018247 -
Gabi2722g00034 557 PANTHER SERINE/THREONINE-PROTEIN KINASE 86 526 - -
Gabi2722g00034 557 FunFam Calcium-dependent protein kinase 1 96 179 - -
Gabi2722g00034 557 ProSitePatterns EF-hand calcium-binding domain. 408 420 IPR018247 -
Gabi2722g00034 557 Gene3D Phosphorylase Kinase; domain 1 96 179 - -
Gabi2722g00034 557 Pfam EF-hand domain pair 470 531 IPR002048 GO:0005509
Gabi2722g00034 557 Pfam EF-hand domain pair 400 460 IPR002048 GO:0005509
Gabi2722g00034 557 ProSiteProfiles EF-hand calcium-binding domain profile. 467 502 IPR002048 GO:0005509
Gabi2722g00034 557 MobiDBLite consensus disorder prediction 25 39 - -
Gabi2722g00034 557 Gene3D - 362 534 - -
Gabi2722g00034 557 MobiDBLite consensus disorder prediction 1 64 - -
Gabi2722g00034 557 Gene3D Transferase(Phosphotransferase) domain 1 180 361 - -
Gabi2722g00034 557 SUPERFAMILY EF-hand 376 533 IPR011992 -
Gabi2722g00034 557 SUPERFAMILY Protein kinase-like (PK-like) 78 376 IPR011009 -
Gabi2722g00034 557 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Gabi2722g00034 557 SMART serkin_6 94 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2722g00034 557 CDD STKc_CAMK 94 351 - -
Gabi2722g00034 557 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Gabi2722g00034 557 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Gabi2722g00034 557 Pfam Protein kinase domain 94 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2722g00034 557 ProSiteProfiles Protein kinase domain profile. 94 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2722g00034 557 FunFam Calcium-dependent protein kinase 5 180 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2722g00034 Gabi-Chr2722 308486 316358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2722g00034 1 553 EF-hand Containing Proteins AT2G17290 84.657 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi2722g00034 Pkinase 5.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2722g00034 K13412 - gmx:100778173 1023.85