Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2722g00016 ATGATGCCGGAGATCGAACCAGCGGCGGAGAACACCGCCCTGTTCGGAAAATACGAGGTCGGGAGGCTACTTGGTTGCGGGGCCTTCGCGAAGGTGTACTATGCACGGAACGTGCACACGGGGCAGAGCGTGGCGGTGAAGGTGATAAACAAGAAGAAGATCGCCGGAACGGCACTCGAATCGAACGTGAAGCGCGAGATCTCAATCATGAGCTGTCTCCACCACCCCAACATCGTGAGGCTCCACGAGGTTCTCGCCACCAAAACCAAAATCTACTTCGTCATGGAGTTCGTTAAAGGTGGCGAGTTGTTCGCCAAAATCTCCAAGGGTCGTTTCAGCGAGGATCTCGCTCGGCGATACTTTCACCAGCTTATCTCCGCCGTAGGATACTGCCACTCCCGCGGCGTTTACCACCGCGATTTGAAGCCTGAGAATCTCTTGCTGGACGAGCACGGTAACCTCAAGGTCTCGGATTTCGGACTCAGCGCTGTTAAGGGTCAGGTCCGAGTCGATGGGTTGCTTCACACGCTTTGCGGCACGCCGGCTTACGTGGCGCCGGAGATTCTGGCCAAGAAGGGCTACGACGGCGCCAAGGTGGACGTTTGGTCGTGTGGCGTTATCCTCTTTGTTCTTGTTGCTGGGTATCTTCCATTCAATGACCCTAACTTGATGGTAATGTATAAAAAGATTTACAAAGGGGAATTTCGGTGCCCACGGTGGATGTCGCCGGAGCTGCGGCGGTTTTTGTCGCGGTTGCTGGACACGACGCCGGAGACGAGGATCACTGTCGATGAGATTCTCAGGGACCCGTGGTTCCGGAAGGGGTTCAAGGAAGTGAAGTTTCACGAAGAGGATTTTGGGTCGAAGCTTGATGGTGATGAGAAGATGACGAATTTGAACGCGTTTGATATTATATCTTTTTCTTCGGGTTTGAACCTTTCGAGGTTGTTTGACGCGTCGAGCAGCGTTGCGACGGAGGACAGCGAGCGGTTATTGGCGCGCGAGTCACCGGAGAAGATTGTTGAGAAGGTGGAGGAGTTTGCGAAGGCGGAGAGTCTCGCCGTGAGGAGGAAGAAGGAGTGTGGGGTTGAGCTGCAGGGGCCTGATGGTAATTTCGGAATTTCTGTGGAGGTTTACCGGTTAACGCCGGAGCTGGTGGTGGTGGAGGCGAAGAGGAGGGTCGGGGATGCGGTTGTTTTCAAGGATGTGTGGAAGAACAAGCTGAAGCCTCACCTTTGTGCTGCCGGCAGTGGCACGGCGTCGCATCAGCACGAAACCGAGTCTTAG 1287 0.5493 MMPEIEPAAENTALFGKYEVGRLLGCGAFAKVYYARNVHTGQSVAVKVINKKKIAGTALESNVKREISIMSCLHHPNIVRLHEVLATKTKIYFVMEFVKGGELFAKISKGRFSEDLARRYFHQLISAVGYCHSRGVYHRDLKPENLLLDEHGNLKVSDFGLSAVKGQVRVDGLLHTLCGTPAYVAPEILAKKGYDGAKVDVWSCGVILFVLVAGYLPFNDPNLMVMYKKIYKGEFRCPRWMSPELRRFLSRLLDTTPETRITVDEILRDPWFRKGFKEVKFHEEDFGSKLDGDEKMTNLNAFDIISFSSGLNLSRLFDASSSVATEDSERLLARESPEKIVEKVEEFAKAESLAVRRKKECGVELQGPDGNFGISVEVYRLTPELVVVEAKRRVGDAVVFKDVWKNKLKPHLCAAGSGTASHQHETES 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2722g00016 428 SUPERFAMILY Protein kinase-like (PK-like) 15 282 IPR011009 -
Gabi2722g00016 428 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2722g00016 428 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2722g00016 428 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Gabi2722g00016 428 Pfam NAF domain 297 356 IPR004041 GO:0007165
Gabi2722g00016 428 FunFam Non-specific serine/threonine protein kinase 8 302 - -
Gabi2722g00016 428 CDD CIPK_C 300 413 - -
Gabi2722g00016 428 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 393 - -
Gabi2722g00016 428 ProSiteProfiles NAF domain profile. 294 318 IPR018451 GO:0007165
Gabi2722g00016 428 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Gabi2722g00016 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Gabi2722g00016 428 Gene3D Kinase associated domain 1, KA1 295 415 - -
Gabi2722g00016 428 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2722g00016 428 Gene3D Phosphorylase Kinase; domain 1 4 99 - -
Gabi2722g00016 428 Gene3D Transferase(Phosphotransferase) domain 1 100 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2722g00016 Gabi-Chr2722 121028 122801 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2722g00016 2 421 CBL-interacting serine-threonine protein kinases AT2G30360 66.357 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi2722g00016 Pkinase 1.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2722g00016 - - gmx:100815088 629.787