Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2722g00008 ATGCAAGCTGAACCCTTGATATCAAGAATTAAGGTTTCGGGGCTCAATATTTTACAGCAGCTGAAGGCTTCGCAGCAATATCTCCCGGATGATTTGGGACCTGATACATCATCAGCCATTAAAGAAGCTGTTATGGAACAACTGGAAGGTGTAGGACCCAGTTCAGAGGTCCTGGCCAAGATTGCTGAGAACCTGGGCTTAAGGTCTAATCAGGAGGTTCTGATTGAGGCCGTGGCCCTTCAAAACTTGAAGGAGAATGCTGAACAAGCTGAAAATACTGCAGAAGCTGAATATATTGATCAAATGATCTCTGTTGTAACTCGTATGCATGAGCATCTTGTTATGCTTAAGCAAGCTCAGAGCTCTATACCAGAGTCAGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTCATTGTGTCATCAGGGCAAACCTATGAGCGCGCTTTCATCAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAGACTCTAGTACACACCAACCTAATACCTAACTACACTGTAAAGGCATTAATAGCAAACTGGTGTGAAACAAACAATGTGAAGCTTGTTGATCCCGTTAAGTCCACAAATTTAAATCAACCATCTCTCCTTCATGGGTCTATGGAGTCTGGTTCAACCAAAGAATCACCTATTATAACTTCTTTTGGTGGAATCCACCAAGAGGGAACATCATCATTGCATCCTCATGCAACTCCAGAAGGTTCCTTAAACGGCACGGTTAATGGGCAGCATGTGGATCTTGCAAGAATATCACACACAGGTTCAGATGACGGGTCTGTCAGCTCAGATGAAGTGAGTGTGGATTCAGTTGGCCAATCATTAATGTCTCCATCTAGAAGGGAATCATCCAATGCCTTGAGCTCAGAACAATCTCAAACCCATGATAGAAATGTTTCTGATACCAGTGTGATCTCTAGTGCAAATATTCCTCAAGGTACACATGATGACAACAATAGTGTTCCACTGCTGTCAACCAATCCAGTATACAGTCGAGATACTTTTGGAGAACTAAATCCGGGGGCAGATGCTGCTTCCATGCCAACTCTGCATAAAGAACCTGAGTTTTCTCCCCAGTTGGTGGGGCCAAGGTCTCAAAGCCAAACTGTACGGCGACGGTCATCAGAGAGGTTTGTTTCTAAAATAGTGTCTTCTTCTTCTGTTGAAACCAGAGCTGATCTTTCTGGTACTGAAACCCGGGTTCAGAAATTGGTCGAGGACTTAAAGAGCAATTCTCTTGATGCTAAGAGAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGCACAACATGGATAACCGAATTTTAATTTCAAATTGTGGAGCCATTAGCTTATTAGTTGAATTACTTCGATCAACTGATACCATGATCCAAGAAAATTCTGTTACAGCACTTCTTAACTTATCAATCAATGATAACAACAAAACTGCGATAGCAAATGCTGGTGCAATTGAACCTCTGATTCAAGTCCTTGAGACAGGGAGCCCAGAAGCAAAGGAGAATTCAGCTGCCACTCTATTCAGCTTATCAGTTATTGAGGAAAACAAGATCAATATAGGGAGGTCTGGGGCAATTAGACCACTGGTTGATTTATTAGGGAACGGAACCCCTAGGGGGAAGAAAGATGCTGCTACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGATCGGATTGTGGAAGCTGGGGCCGTGAAGCACCTTGTAGAGTTAATGGATCCTGCAGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAATCTCGCCACAATACAAGAAGGAAAAACAGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTTGAGTTGGGTTCTGCGAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATCTATGCTCAAACAATCAAAGATTTTTAAACTCGGTGCTCCAAGAAGGAGCTGTGCCCCCATTAGTAGCTTTGTCACAGTCAGGCACTCCAAGGGCCAAAGAAAAGGCCCTGGCTCTCCTTAATCAATTTAGAAGCCAAAGACATGGTACCGCTGGGAGGGCTTGA 2109 0.4376 MQAEPLISRIKVSGLNILQQLKASQQYLPDDLGPDTSSAIKEAVMEQLEGVGPSSEVLAKIAENLGLRSNQEVLIEAVALQNLKENAEQAENTAEAEYIDQMISVVTRMHEHLVMLKQAQSSIPESVPADFCCPLSLELMTDPVIVSSGQTYERAFIKNWIDLGLTVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLVDPVKSTNLNQPSLLHGSMESGSTKESPIITSFGGIHQEGTSSLHPHATPEGSLNGTVNGQHVDLARISHTGSDDGSVSSDEVSVDSVGQSLMSPSRRESSNALSSEQSQTHDRNVSDTSVISSANIPQGTHDDNNSVPLLSTNPVYSRDTFGELNPGADAASMPTLHKEPEFSPQLVGPRSQSQTVRRRSSERFVSKIVSSSSVETRADLSGTETRVQKLVEDLKSNSLDAKREATAELRLLAKHNMDNRILISNCGAISLLVELLRSTDTMIQENSVTALLNLSINDNNKTAIANAGAIEPLIQVLETGSPEAKENSAATLFSLSVIEENKINIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVEAGAVKHLVELMDPAAGMVDKAVAVLANLATIQEGKTAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCSNNQRFLNSVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGTAGRA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2722g00008 702 SMART Ubox_2 130 193 IPR003613 GO:0004842|GO:0016567
Gabi2722g00008 702 MobiDBLite consensus disorder prediction 237 351 - -
Gabi2722g00008 702 ProSiteProfiles U-box domain profile. 126 200 IPR003613 GO:0004842|GO:0016567
Gabi2722g00008 702 PANTHER U BOX DOMAIN-CONTAINING 39 691 - -
Gabi2722g00008 702 Gene3D - 381 699 IPR011989 -
Gabi2722g00008 702 MobiDBLite consensus disorder prediction 237 391 - -
Gabi2722g00008 702 SUPERFAMILY RING/U-box 116 204 - -
Gabi2722g00008 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 501 IPR000225 GO:0005515
Gabi2722g00008 702 CDD RING-Ubox_PUB 128 180 IPR045210 -
Gabi2722g00008 702 Pfam Armadillo/beta-catenin-like repeat 489 528 IPR000225 GO:0005515
Gabi2722g00008 702 Pfam Armadillo/beta-catenin-like repeat 450 487 IPR000225 GO:0005515
Gabi2722g00008 702 Pfam Armadillo/beta-catenin-like repeat 573 609 IPR000225 GO:0005515
Gabi2722g00008 702 Pfam Armadillo/beta-catenin-like repeat 532 569 IPR000225 GO:0005515
Gabi2722g00008 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 583 IPR000225 GO:0005515
Gabi2722g00008 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 582 623 IPR000225 GO:0005515
Gabi2722g00008 702 Pfam U-box domain 127 197 IPR003613 GO:0004842|GO:0016567
Gabi2722g00008 702 FunFam RING-type E3 ubiquitin transferase 126 201 - -
Gabi2722g00008 702 SMART arm_5 530 570 IPR000225 GO:0005515
Gabi2722g00008 702 SMART arm_5 652 693 IPR000225 GO:0005515
Gabi2722g00008 702 SMART arm_5 489 529 IPR000225 GO:0005515
Gabi2722g00008 702 SMART arm_5 571 610 IPR000225 GO:0005515
Gabi2722g00008 702 SMART arm_5 611 651 IPR000225 GO:0005515
Gabi2722g00008 702 SMART arm_5 448 488 IPR000225 GO:0005515
Gabi2722g00008 702 SUPERFAMILY ARM repeat 419 691 IPR016024 -
Gabi2722g00008 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 500 542 IPR000225 GO:0005515
Gabi2722g00008 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 206 IPR013083 -
Gabi2722g00008 702 FunFam RING-type E3 ubiquitin transferase 402 697 - -
Gabi2722g00008 702 Coils Coil 70 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2722g00008 Gabi-Chr2722 58773 62494 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2722g00008 87 702 U-box Gene Family AT2G23140 62.053 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2722g00008 - - gmx:100777715 996.497