Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2722g00007 ATGGAGATATCTTTGTTAAAGGTGCTCTCTAATGGCATATCCTCATTTTTGCGTTTATCATTTTCTGGCAAAATGAACTCAGAACTGGTATCAAAGTATTACCAAAAGGCAGAGAAGATGCTTAAGTTGTTGAAACCAATTATTGAGGCAACTGATAATTCTGATTTTGCTTCTGATGAAGTTCTTAGTAAGCTATTCAAGGAACTTGGTCTGGATGTTGATGAGTTGAGGGAGCTTATTCAGAACTGGCATCTATTATCTAGCAAATTTTACTTTGTTATGCAAGCTGAACCCTTGATATCAAGAATTAAGGTTTCGGGGCTCAATATTTTACAGCAGCTGAAGGCTTCGCAGCAATATCTCCCGGATGATTTGGGACCTGATACATCATCAGCCATTAAAGAAGCTGTTATGGAACAACTGGAAGGTGTAGGACCCAGTTCAGAGGTCCTGGCCAAGATTGCTGAGAACCTGGGCTTAAGGTCTAATCAGGAGGTTCTGATTGAGGCCGTGGCCCTTCAAAACTTGAAGGAGAATGCTGAACAAGCTGAAAATACTGCAGAAGCTGAATATATTGATCAAATGATCTCTGTTGTAACTCGTATGCATGAGCATCTTGTTATGCTTAAGCAAGCTCAGAGCTCTATACCAGAGTCAGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTCATTGTGTCATCAGGGCAAACCTATGAGCGCGCTTTCATCAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAGACTCTAGTACACACCAACCTAATACCTAACTACACTGTAAAGGCATTAATAGCAAACTGGTGTGAAACAAACAATGTGAAGCTTGTTGATCCCGTTAAGTCCACAAATTTAAATCAACCATCTCTCCTTCATGGGTCTATGGAGTCTGGTTCAACCAAAGAATCACCTATTATAACTTCTTTTGGTGGAATCCACCAAGAGGGAACATCATCATTGCATCCTCATGCAACTCCAGAAGGTTCCTTAAACGGCACGGTTAATGGGCAGCATGTGGATCTTGCAAGAATATCACACACAGGTTCAGATGACGGGTCTGTCAGCTCAGATGAAGTGAGTGTGGATTCAGTTGGCCAATCATTAATGTCTCCATCTAGAAGGGAATCATCCAATGCCTTGAGCTCAGAACAATCTCAAACCCATGATAGAAATGTTTCTGATACCAGTGTGATCTCTAGTGCAAATATTCCTCAAGGTACACATGATGACAACAATAGTGTTCCACTGCTGTCAACCAATCCAGTATACAGTCGAGATACTTTTGGAGAACTAAATCCGGGGGCAGATGCTGCTTCCATGCCAACTCTGCATAAAGAACCTGAGTTTTCTCCCCAGTTGGTGGGGCCAAGGTCTCAAAGCCAAACTGTACGGCGACGGTCATCAGAGAGGTTTGTTTCTAAAATAGTGTCTTCTTCTTCTGTTGAAACCAGAGCTGATCTTTCTGGTACTGAAACCCGGGTTCAGAAATTGGTCGAGGACTTAAAGAGCAATTCTCTTGATGCTAAGAGAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGCACAACATGGATAACCGAATTTTAATTTCAAATTGTGGAGCCATTAGCTTATTAGTTGAATTACTTCGATCAACTGATACCATGATCCAAGAAAATTCTGTTACAGCACTTCTTAACTTATCAATCAATGATAACAACAAAACTGCGATAGCAAATGCTGGTGCAATTGAACCTCTGATTCAAGTCCTTGAGACAGGGAGCCCAGAAGCAAAGGAGAATTCAGCTGCCACTCTATTCAGCTTATCAGTTATTGAGGAAAACAAGATCAATATAGGGAGGTCTGGGGCAATTAGACCACTGGTTGATTTATTAGGGAACGGAACCCCTAGGGGGAAGAAAGATGCTGCTACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGGATCGGATTGTGGAAGCTGGGGCCGTGAAGCACCTTGTAGAGTTAATGGATCCTGCAGCTGGAATGGTTGATAAGGCAGTGGCTGTTTTAGCAAATCTCGCCACAATACAAGAAGGAAAAACAGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTTGAGTTGGGTTCTGCGAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATCTATGCTCAAACAATCAAAGATTTTTAAACTCGGTGCTCCAAGAAGGAGCTGTGCCCCCATTAGTAGCTTTGTCACAGTCAGGCACTCCAAGGGCCAAAGAAAAGGCCCTGGCTCTCCTTAATCAATTTAGAAGCCAAAGACATGGTACCGCTGGGAGGGCTTGA 2388 0.4276 MEISLLKVLSNGISSFLRLSFSGKMNSELVSKYYQKAEKMLKLLKPIIEATDNSDFASDEVLSKLFKELGLDVDELRELIQNWHLLSSKFYFVMQAEPLISRIKVSGLNILQQLKASQQYLPDDLGPDTSSAIKEAVMEQLEGVGPSSEVLAKIAENLGLRSNQEVLIEAVALQNLKENAEQAENTAEAEYIDQMISVVTRMHEHLVMLKQAQSSIPESVPADFCCPLSLELMTDPVIVSSGQTYERAFIKNWIDLGLTVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLVDPVKSTNLNQPSLLHGSMESGSTKESPIITSFGGIHQEGTSSLHPHATPEGSLNGTVNGQHVDLARISHTGSDDGSVSSDEVSVDSVGQSLMSPSRRESSNALSSEQSQTHDRNVSDTSVISSANIPQGTHDDNNSVPLLSTNPVYSRDTFGELNPGADAASMPTLHKEPEFSPQLVGPRSQSQTVRRRSSERFVSKIVSSSSVETRADLSGTETRVQKLVEDLKSNSLDAKREATAELRLLAKHNMDNRILISNCGAISLLVELLRSTDTMIQENSVTALLNLSINDNNKTAIANAGAIEPLIQVLETGSPEAKENSAATLFSLSVIEENKINIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIFHENKDRIVEAGAVKHLVELMDPAAGMVDKAVAVLANLATIQEGKTAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCSNNQRFLNSVLQEGAVPPLVALSQSGTPRAKEKALALLNQFRSQRHGTAGRA 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2722g00007 795 SMART arm_5 664 703 IPR000225 GO:0005515
Gabi2722g00007 795 SMART arm_5 541 581 IPR000225 GO:0005515
Gabi2722g00007 795 SMART arm_5 582 622 IPR000225 GO:0005515
Gabi2722g00007 795 SMART arm_5 745 786 IPR000225 GO:0005515
Gabi2722g00007 795 SMART arm_5 704 744 IPR000225 GO:0005515
Gabi2722g00007 795 SMART arm_5 623 663 IPR000225 GO:0005515
Gabi2722g00007 795 MobiDBLite consensus disorder prediction 330 444 - -
Gabi2722g00007 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 675 716 IPR000225 GO:0005515
Gabi2722g00007 795 PANTHER U BOX DOMAIN-CONTAINING 31 784 - -
Gabi2722g00007 795 Coils Coil 163 193 - -
Gabi2722g00007 795 FunFam RING-type E3 ubiquitin transferase 219 294 - -
Gabi2722g00007 795 SUPERFAMILY ARM repeat 512 784 IPR016024 -
Gabi2722g00007 795 SUPERFAMILY RING/U-box 209 297 - -
Gabi2722g00007 795 CDD RING-Ubox_PUB 221 273 IPR045210 -
Gabi2722g00007 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 552 594 IPR000225 GO:0005515
Gabi2722g00007 795 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Gabi2722g00007 795 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Gabi2722g00007 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 634 676 IPR000225 GO:0005515
Gabi2722g00007 795 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Gabi2722g00007 795 Pfam Armadillo/beta-catenin-like repeat 625 662 IPR000225 GO:0005515
Gabi2722g00007 795 Pfam Armadillo/beta-catenin-like repeat 543 580 IPR000225 GO:0005515
Gabi2722g00007 795 Pfam Armadillo/beta-catenin-like repeat 666 702 IPR000225 GO:0005515
Gabi2722g00007 795 Pfam Armadillo/beta-catenin-like repeat 582 621 IPR000225 GO:0005515
Gabi2722g00007 795 MobiDBLite consensus disorder prediction 330 484 - -
Gabi2722g00007 795 Gene3D - 474 792 IPR011989 -
Gabi2722g00007 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 299 IPR013083 -
Gabi2722g00007 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 593 635 IPR000225 GO:0005515
Gabi2722g00007 795 FunFam RING-type E3 ubiquitin transferase 495 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2722g00007 Gabi-Chr2722 58773 65473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2722g00007 180 795 U-box Gene Family AT2G23140 62.053 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2722g00007 - - gmx:100777715 1123.61