Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2720g00015 ATGGAAATGGAAGCTTTTGATTGGGGTTCTGGCATTTATGGAGATACCCCTGAGAGAATACCAGATGGTTTTCAAGTAAACAATACTGTAATTGGAAATGGGTATGGTTCATCTTTATCTATGGTTTTGGATAGGGACAGAGGGGAGCTTGTGAAGGCACCTTCCAAATTGGAACCAAAGAGTGTGTCCACCGAGAGAAGCATTGAAGCTTTGAAGAGCCATAAAGAGGCAGAGAGGAGGAGGAGGGCAAGGATTAATTCACATCTTGATACACTTCGCAGTGTAATTCCAGGTGCTAAGAAGATGGACAAAGCGTCATTACTTGGTGAGGTTATTAGACATTTGAAAGAGCTGAAAATGAATGCAGCACAATCTTGTGAAGGTTTGGTGATACCAAAGGACAATGATGAAATAAGTGTTGAAGAACACGAGGGTGGATTGAATGGTTTTCCTTATTCAATTAGAGCATCTCTATGTTGTGAATATAAACCCGGGTTATTGTCAAATATAAGACAAGAACTAGATGCTCTTCATCTAATGATAATGAGGGCAGATATTGCAACCCTTGGAGGCAGAATGAAGAATGTATTTGTGATAATTAGCTGCAAAGAACAGAACTTTGAAGATGCTGTATCCCGTCAGTTTCTTGCTGGCTCTGTTCATCAAGCTCTTAGGTCTGTACTCAGTAGATTTTCTGTTTCACAGGACATCTTAGGAACCAGAAAAAGAAGGAGGATTTCTATATTCAGTTCGTCATCTTTAGAAGATTTGTTGTAA 777 0.3964 MEMEAFDWGSGIYGDTPERIPDGFQVNNTVIGNGYGSSLSMVLDRDRGELVKAPSKLEPKSVSTERSIEALKSHKEAERRRRARINSHLDTLRSVIPGAKKMDKASLLGEVIRHLKELKMNAAQSCEGLVIPKDNDEISVEEHEGGLNGFPYSIRASLCCEYKPGLLSNIRQELDALHLMIMRADIATLGGRMKNVFVIISCKEQNFEDAVSRQFLAGSVHQALRSVLSRFSVSQDILGTRKRRRISIFSSSSLEDLL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2720g00015 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 120 IPR036638 GO:0046983
Gabi2720g00015 258 CDD ACT_UUR-ACR-like 157 228 - -
Gabi2720g00015 258 Gene3D - 64 126 IPR036638 GO:0046983
Gabi2720g00015 258 SMART finulus 75 124 IPR011598 GO:0046983
Gabi2720g00015 258 Pfam Helix-loop-helix DNA-binding domain 73 118 IPR011598 GO:0046983
Gabi2720g00015 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 118 IPR011598 GO:0046983
Gabi2720g00015 258 PANTHER TRANSCRIPTION FACTOR BHLH30 47 250 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2720g00015 Gabi-Chr2720 289671 291032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2720g00015 56 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.796 2.52e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2720g00015 HLH 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2720g00015 - - gmx:100788819 391.349