Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2719g00015 ATGGATTCTGAGGATGATATGCACGACGCCAACGATGTCGAGTCCCTTGATGACGATTTCTACAGTGGCGAGACAGAGGATGCTCCTATGGATTACTACAGCGAATACGATGATGAAGCCGATGATTACTTCGATGATGCCGACGATTCCGACCGAATTGAGTCTCGTCGACCGGAGCTGAATTTTACCATATTGAGGGAATCAGATATCCGGCAAAGGCAGGAAGATGACATCACTAGAGTAGCAACGGTTCTTTCTATACCAAGAGTTTCTGCAAGCATCCTACTTCGTCATTACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGATCAAGTCCGAAAAGCAGTTGGTTTGTTGGAGAAGCCGGTTTTCCAGTCTCCTAATCCTAGAGAGCTTACTTGCGGCATCTGTTTTGAAAATTATCCTCGTGCTAGGATTGAAACTGCTACTTGCGGTCATCCCTACTGCTTTTCATGCTGGGCAGGATATATTGGCACATCAATTAATGATGGTCCGGGATGTTTGATGTTGAGATGTCCTGATCCCTCTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTGGCATCTGATGAAGATAAAGAGAAGTACTCACGTTACCTTCTTAGATCTTACATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGTAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAACTGCACTGAGGAGGCTCACCGCCCAGTGGATTGTGGCACTGTGGCTAGATGGATTTTGAAAAATAGTGCAGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCGATTGAAAAAAACCAAGGGTGCATGCACATGACATGTACTCCACCTTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGCGGTTTCTATGCTTGCAATCGTTACGAAGCTGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATTTACATCAGATGCAAAATATTGAGAAGCTTAGTGACACACAGTGCCAGCCTGAGTCACAGCTTAAGTTCATTACTGAGGCCTGGTTACAGATAGTGGAATGCAGGCGGGTGCTGAAGTGGACGTATGCATATGGATACTATTTACCTGAGCATGAACATGCTAAAAAGCAGTTTTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCCGAAAAGGAACTACAGCTATTCCTCAATGCTGATGGCCCATCTAGAGAATTCAATGACTTCCGCACCAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGCTTAGCTGATGTGGATAGTAATGGAGCTGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGAAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACTATTCGAACTAACATGTCCAGCAGAATGACTGATGATAATCATTGGTCTTGTGAGCATTGCACCTTTGCAAATGTCAAATCTGCCACCACATGCCAGATGTGCAATCAACAGCGTCGTTGA 1767 0.4414 MDSEDDMHDANDVESLDDDFYSGETEDAPMDYYSEYDDEADDYFDDADDSDRIESRRPELNFTILRESDIRQRQEDDITRVATVLSIPRVSASILLRHYNWSVSKVHDAWFADEDQVRKAVGLLEKPVFQSPNPRELTCGICFENYPRARIETATCGHPYCFSCWAGYIGTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDEDKEKYSRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQNIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSNGAASSKATSSKNAAGSSKGRGGRGKGTIRTNMSSRMTDDNHWSCEHCTFANVKSATTCQMCNQQRR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2719g00015 588 MobiDBLite consensus disorder prediction 521 538 - -
Gabi2719g00015 588 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 434 IPR031127 GO:0004842|GO:0016567
Gabi2719g00015 588 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Gabi2719g00015 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 219 IPR013083 -
Gabi2719g00015 588 Gene3D - 558 588 - -
Gabi2719g00015 588 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Gabi2719g00015 588 CDD Rcat_RBR_ARI7-like 293 347 - -
Gabi2719g00015 588 ProSiteProfiles Zinc finger RanBP2 type profile. 560 588 IPR001876 -
Gabi2719g00015 588 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Gabi2719g00015 588 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
Gabi2719g00015 588 Pfam Ariadne domain 357 517 IPR045840 -
Gabi2719g00015 588 MobiDBLite consensus disorder prediction 1 48 - -
Gabi2719g00015 588 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Gabi2719g00015 588 SUPERFAMILY RING/U-box 208 277 - -
Gabi2719g00015 588 Gene3D - 266 519 - -
Gabi2719g00015 588 CDD BRcat_RBR_ANKIB1 215 279 - -
Gabi2719g00015 588 SUPERFAMILY RING/U-box 289 337 - -
Gabi2719g00015 588 SMART ibrneu5 208 270 IPR002867 GO:0008270
Gabi2719g00015 588 SMART ibrneu5 274 344 IPR002867 GO:0008270
Gabi2719g00015 588 FunFam RBR-type E3 ubiquitin transferase 271 519 - -
Gabi2719g00015 588 CDD RING-HC_ARI6-like 136 197 - -
Gabi2719g00015 588 SMART zf_4 562 586 IPR001876 -
Gabi2719g00015 588 MobiDBLite consensus disorder prediction 1 50 - -
Gabi2719g00015 588 ProSitePatterns Zinc finger RanBP2-type signature. 564 583 IPR001876 -
Gabi2719g00015 588 MobiDBLite consensus disorder prediction 521 557 - -
Gabi2719g00015 588 SUPERFAMILY Ran binding protein zinc finger-like 560 587 IPR036443 -
Gabi2719g00015 588 Pfam Zinc finger, C3HC4 type (RING finger) 139 170 IPR018957 GO:0046872
Gabi2719g00015 588 SUPERFAMILY RING/U-box 134 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2719g00015 Gabi-Chr2719 190629 198241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2719g00015 17 587 ARIADNE family AT1G65430 70.034 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2719g00015 K11968 - gmx:100810427 1126.31