Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2716g00001 AGGTTACCTTGGGCAGGAAACATATGTGCTTCAACGATTGTAGCAATTGTAGCAATTGTTGTCCCAAATGTTATTTTGGTGGCGCTTTTGGTTCTAGGCTGTTGCAGTTGCTGGAGAAGAAGGCGAAACAAAAACCATGATGCAGATCTAGAAATGGGAGATAGCAGTAATTGTTATTGCTCTTACTATTTCGCAGCTAGGAATTATTTTACTTGTCAAGAAGAGTCCTTGCATTTTGACTTGGCTACAATTGAAGCTGCAACAAATAAGTTCTCGAATGAGAAGAAGATAGGCCAAGGTGGATTTGGTGTGGTTTATAAGGGTACCCTTCCTAATGGACAAGAGATAGCTGCAAAGAGGCTATCCAGAAGCTCCTTGCAGGGTGACATCGAATTCAAGAACGAGGCTGCACTTGTTGCACTTCAACATAGAAATTTAGTTAGGCTTTTAGGGTTTTGCTTGGAGGGAGCAGAGAGGATACTTGTTTACGAATTCATCCCCAATTCAAGCCTTGACCGCTTTCTATGTGATCATGAGAACCAAGCAGAGTTTGATTGGGCAACACGTTACCAAATTATAGTTGGGATTGCTGGAGGAGTTAAATACATGCATGAAGATTCTAATCTTAGAATAATACATCGTGATCTCAAGGCTAGTAATGTCCTATTAGATGACGAAATGAATCCAAAGATTTCAGATTTTGGCATGGCAAAGATTTTCCATGGAGACCAAAGTCAAGTTGACTCTACAACAGAAAGGATAGTTGGAACTTATGGTTACATGGCTCCTGAATATGCAATGTATGGAGAATTATCTGTGAAATCCGATGTGTTCAGCTTCGGAGTCTTGCTTTTGGAGATCATTAGTGGCACGAAGAACACGAGTTATTGTCAATCACAAGATGATGATGACCTTTTGAGCTATGCTTGGAAAAATTGGAAGAATCAAACACCTTTCCTTATTTTGGACCCAAAACTGGGAGATTTGTATTCTAGAAATGAAGTTCAGAGATGCATCCATATTGCTTTATTATGCGTTCAAGAAAATCCAGCTGACAGACCTTCAATGGCGAGTGTAGTACTTTGGTTGAACAGTTATTCAGTAACCTTAGCATTACCTCGACAGCCAGCATCTGTTTTTCTTGGAAGCCCTTCACCAGACAGATTAAGACACCAGCTTTATTCTGATCTGTCTACCAGCTCTATCTCTATGAATAATTATTTAATTACTGAAATATATCCCCGATAA 1248 0.3966 RLPWAGNICASTIVAIVAIVVPNVILVALLVLGCCSCWRRRRNKNHDADLEMGDSSNCYCSYYFAARNYFTCQEESLHFDLATIEAATNKFSNEKKIGQGGFGVVYKGTLPNGQEIAAKRLSRSSLQGDIEFKNEAALVALQHRNLVRLLGFCLEGAERILVYEFIPNSSLDRFLCDHENQAEFDWATRYQIIVGIAGGVKYMHEDSNLRIIHRDLKASNVLLDDEMNPKISDFGMAKIFHGDQSQVDSTTERIVGTYGYMAPEYAMYGELSVKSDVFSFGVLLLEIISGTKNTSYCQSQDDDDLLSYAWKNWKNQTPFLILDPKLGDLYSRNEVQRCIHIALLCVQENPADRPSMASVVLWLNSYSVTLALPRQPASVFLGSPSPDRLRHQLYSDLSTSSISMNNYLITEIYPR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2716g00001 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Gabi2716g00001 415 ProSiteProfiles Protein kinase domain profile. 91 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2716g00001 415 FunFam Cysteine-rich receptor-like protein kinase 10 47 165 - -
Gabi2716g00001 415 SUPERFAMILY Protein kinase-like (PK-like) 76 402 IPR011009 -
Gabi2716g00001 415 FunFam cysteine-rich receptor-like protein kinase 10 166 370 - -
Gabi2716g00001 415 CDD STKc_IRAK 97 360 - -
Gabi2716g00001 415 ProSitePatterns Protein kinases ATP-binding region signature. 97 119 IPR017441 GO:0005524
Gabi2716g00001 415 SMART serkin_6 91 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2716g00001 415 Gene3D Transferase(Phosphotransferase) domain 1 166 371 - -
Gabi2716g00001 415 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 12 404 - -
Gabi2716g00001 415 Gene3D Phosphorylase Kinase; domain 1 61 165 - -
Gabi2716g00001 415 Pfam Protein tyrosine and serine/threonine kinase 93 360 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2716g00001 Gabi-Chr2716 360 2595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2716g00001 16 415 Receptor kinase-like Gene Family AT4G21410 51.843 1.38e-133 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2716g00001 PK_Tyr_Ser-Thr 9.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2716g00001 - - ccaj:109806163 555.058