Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2710g00025 ATGCCTCTGTATGAGTTATACCGGCTGGCTAGAGAGAAGCTTGGTGAAGACATTAATAACAGCACACATACAGCTGATCAATCTTCCTCGCCTGAGAATGATTTTTTTGAGCTGGTTTGGGAAAATGGTCAGATTTCGAGCCAGGGTCAATCCAGTAGAGCTAGAAAGAGCCCCTCCTGCAGGAGTTTGCCATCTTATTGCTTACCATCTCACACTCCCAAGGGTCGAGATAAAGATGTAGGATATGGTACCAATACAAGGCTGGGAAAGTTTGGGGATTTAGACTCTGGACTAAATGAAATTCCAATGTCAGTGCCATCCCGTGAAGTGGATTTGAGTCAAGATGAAGATGTGATACCTTGGTTGGATTATACAATGGATGCCTCTTTGCAACATGAATATAGTTCTGATTTTTTACATGAACTATCTGGGGTCACGGAAAATGACCTTCATGTCTCAAATAATTTTACTCTATTTGATAAAAGAAGTAATGGCAATCAGGTGTGTAGGGACTCTCATAAATATTCTGCAGAACAAGGTAATGTTTCCAAGGGTTCTTCAGCTGAACAAGTTGAGACTGCTAGACCTAAAGCCAGCACCAGTCAGTTATACCCGCCATCATCGCATCAATGTCAAACATCACTTGTATCTGTTAGATCAAGAGTATCAGATATAACTGAAAATAATATTACTAGTAATGCAACCCAGGATGTGTCTTGTGGTGAGATTACTGAGATTCCATCTTCTTCAAGTGATTTTTCTAGCTTAAAGGTGCAGAAGCAAGATCCAATTATGCCAAGCAATGGTTCCACCATGATGAATTTCTCCCATTTTGCAAGGCCTGCAGCTATTGTGAGAGCTAATCTTCAGAACATTAGCTTGAAGAATGGTTTGGCATCAGCAAGATCAGACAGTATGGGAAATAAGAAGAATAAAGGTACTGCTGCAACTAGCAGCAATCCTCCTGAGTCAACTCTTGTAGATTCAGGTGGTGAATGTCCAAAGGAAAAAACCATGCACTGCCAGCAGGTTGTGGAGCAATCCAAGGCTGATTTGACTTTGCAGCCAAAATCTCTTGAACAGAATGTTGTAGTTTCTAAACAGTTGGAATCTGCTTGCAAAGAGAGTGCCATTAAGATTAATCAATCTTCCAATCAAGTTCTTGATGAAAGTGGTGCTAAAGGACAGACAGTCACTGAAAAAAATATGGAGCCAGCACTAGCCTCTTCCTCTGTTTGCTCTGGCAATGATGCAGATAGAGTTTCAGACAATCCAAATCAAAATTTGAAGCGAAAAAGTAGAGACACCGAGGACTCTGAGTGCCATAGTGAAGATGTGGAGGAAGAATCAATGGGTGTTAAAAAGGCAGCTGCTGGGCGAGGTACTTCAGGTTCAAAGAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATTCCAAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAACTCCAAGTTCAAATGATGTCAATGGGAGCTGGTCTATATATGCCTCAAATGATGTTACCTGCGGGAATGCAGCACATGCATGCACCGCATATGGCTCAATTTTCACCTATGGGTGTTGGCATGCATATGGGGTTGGGTATGGGTTATGGGATGGGCATGCCTGACATGAATGGTGGATCTTCTAGATTCCCAATGATTCAGGTGCCCCAAATGCAAGGAAGTCATATACCTGTTGCACATATGCCTGGATCCACTGCTTTACATGGCATGGCAAGATCAAATCCTTCAGGGTTCGGGATTCACATGCCAATGCAACGTGCTCCTGTATTTCCTTTTTCAGGAGGGCCTCTTATGAACTCAGCAGCTCTGGGACTACATGCATGTGGACCAGCAGGACTTGTTGAAACTGTTGATTCGGGTGCAGCATCTGGCTTAAAGGATCAAATGCCAAATTTGGACCCACAAGTTAACCAGAACACTAGTGGCCGTGGCTCAACAAGTCACATCCCTAACCAGTGTGAAGCAGCAACTGTTGGATATGAACAGTCAGCTTTGGTGCATAATAGAGGTCATGCCTCTGAGGCTAATGACAGTGGAGCTGATAATCCTGGCAAAGAAGATAACCTTGTGATTGGTTATGATTGA 2202 0.4292 MPLYELYRLAREKLGEDINNSTHTADQSSSPENDFFELVWENGQISSQGQSSRARKSPSCRSLPSYCLPSHTPKGRDKDVGYGTNTRLGKFGDLDSGLNEIPMSVPSREVDLSQDEDVIPWLDYTMDASLQHEYSSDFLHELSGVTENDLHVSNNFTLFDKRSNGNQVCRDSHKYSAEQGNVSKGSSAEQVETARPKASTSQLYPPSSHQCQTSLVSVRSRVSDITENNITSNATQDVSCGEITEIPSSSSDFSSLKVQKQDPIMPSNGSTMMNFSHFARPAAIVRANLQNISLKNGLASARSDSMGNKKNKGTAATSSNPPESTLVDSGGECPKEKTMHCQQVVEQSKADLTLQPKSLEQNVVVSKQLESACKESAIKINQSSNQVLDESGAKGQTVTEKNMEPALASSSVCSGNDADRVSDNPNQNLKRKSRDTEDSECHSEDVEEESMGVKKAAAGRGTSGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPAGMQHMHAPHMAQFSPMGVGMHMGLGMGYGMGMPDMNGGSSRFPMIQVPQMQGSHIPVAHMPGSTALHGMARSNPSGFGIHMPMQRAPVFPFSGGPLMNSAALGLHACGPAGLVETVDSGAASGLKDQMPNLDPQVNQNTSGRGSTSHIPNQCEAATVGYEQSALVHNRGHASEANDSGADNPGKEDNLVIGYD 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2710g00025 733 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 469 518 IPR011598 GO:0046983
Gabi2710g00025 733 PANTHER TRANSCRIPTION FACTOR PIF3 1 687 IPR044273 GO:0003700|GO:0006355
Gabi2710g00025 733 Pfam Helix-loop-helix DNA-binding domain 473 519 IPR011598 GO:0046983
Gabi2710g00025 733 MobiDBLite consensus disorder prediction 176 208 - -
Gabi2710g00025 733 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 466 531 IPR036638 GO:0046983
Gabi2710g00025 733 SMART finulus 475 524 IPR011598 GO:0046983
Gabi2710g00025 733 Gene3D - 464 527 IPR036638 GO:0046983
Gabi2710g00025 733 FunFam Basic helix-loop-helix transcription factor 464 527 - -
Gabi2710g00025 733 MobiDBLite consensus disorder prediction 669 687 - -
Gabi2710g00025 733 MobiDBLite consensus disorder prediction 300 326 - -
Gabi2710g00025 733 MobiDBLite consensus disorder prediction 663 687 - -
Gabi2710g00025 733 MobiDBLite consensus disorder prediction 707 733 - -
Gabi2710g00025 733 CDD bHLH_AtPIF_like 469 531 IPR047265 -
Gabi2710g00025 733 MobiDBLite consensus disorder prediction 405 478 - -
Gabi2710g00025 733 MobiDBLite consensus disorder prediction 300 335 - -
Gabi2710g00025 733 MobiDBLite consensus disorder prediction 405 423 - -
Gabi2710g00025 733 MobiDBLite consensus disorder prediction 424 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2710g00025 Gabi-Chr2710 350383 355566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2710g00025 1 598 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 38.010 6.77e-83 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2710g00025 HLH 8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2710g00025 K12126 - gmx:100794974 1077.77