Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2710g00022 ATGAAAGTCAAGATCTTGCGTATCCTTCTATGGCATGCTGTTGCTTCGTGGACTTGGGATGCCCAGGATGAAACATGTGGGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGACTGTAAACTTCCTGGGGATGACTGCCCACTGATTTGGGGTGCATGCAATCACGCATTTCATTTGCACTGTATCTTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGGGAATGGCAGTTTAAAGGATGA 264 0.4735 MKVKILRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2710g00022 87 FunFam Anaphase-promoting complex subunit 11 1 87 - -
Gabi2710g00022 87 CDD RING-H2_APC11 23 85 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Gabi2710g00022 87 ProSiteProfiles Zinc finger RING-type profile. 37 80 IPR001841 -
Gabi2710g00022 87 PANTHER RING BOX 7 86 - -
Gabi2710g00022 87 SUPERFAMILY RING/U-box 6 86 - -
Gabi2710g00022 87 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Gabi2710g00022 87 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 1 86 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2710g00022 Gabi-Chr2710 328456 332377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2710g00022 37 80 C3H Transcription Factor Family AT1G72220 41.304 5.29e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2710g00022 K03358 - ath:AT3G05870 204.527