Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2710g00021 ATGACTAGGAAGAAGGTGAAACTTGCCTTTATCTCTGATGCCTCGGCAAGGAAAGCAACGTACAAGAAAAGGAAGAAGGGTATCATGAAGAAGGTGAGTGAACTCACTATTCTTTGTGGGATTCAAGCCTGTGCTATAATTACCAGTCCTTTTGATTCGAAGACCGAGGTTTGGCCAGATCCAGAGGGAGCCAAGCAGGTGATTGAGAGGTATCGGAATGCAGCTGTTGTAGATGGCAGCAAGAATGTGAACCAAGAGAGTTTCATGATGCAGAGGATTGCCAAAGCCCATGACCAGCTGAAGAAGCAGCGTCAGGAGAACCTTGAGAAAGAGATGACCCTAGCTATGTTCAAGTATATGGAAAGCAAAACCCTGCCAGAAGACCTGACTGTTGAGGAGCTGAAAGAAATGAACAGGCTGATCGAGAAGAATATGAAGGAAATTGAAGACAAGATGGCTGCACTTAAGTGA 471 0.4522 MTRKKVKLAFISDASARKATYKKRKKGIMKKVSELTILCGIQACAIITSPFDSKTEVWPDPEGAKQVIERYRNAAVVDGSKNVNQESFMMQRIAKAHDQLKKQRQENLEKEMTLAMFKYMESKTLPEDLTVEELKEMNRLIEKNMKEIEDKMAALK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2710g00021 156 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Gabi2710g00021 156 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Gabi2710g00021 156 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Gabi2710g00021 156 Coils Coil 131 156 - -
Gabi2710g00021 156 PANTHER MADS BOX PROTEIN 3 152 - -
Gabi2710g00021 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2710g00021 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2710g00021 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Gabi2710g00021 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2710g00021 156 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2710g00021 Gabi-Chr2710 293765 294480 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2710g00021 1 156 Type I MADS-box Gene Family AT5G48670 47.134 3.20e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi2710g00021 SRF-TF 6.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2710g00021 - - gmx:100792290 230.335