Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2710g00006 ATGGATGATAGCTGTGCTGTGTGTGCTGAGACACTGGAGTGGACTGCATATGGACCCTGTGGCCATAGGGAGGTTTGCTCGACCTGTGTTATTCGTCTGCGTTTCATCTGCACTGATAATCATTGCTGTATCTGCAAGTCCATCTCCAACATTATTTTTGTCACCAAGGCTTTAGGAGATTATACAAGGATGATAAATGACTTTTCAGTATTTCCAACCAATCCAAGAGAGGGTAAAGTTGGGTCATATTGGTATCATGAAGGAACACAAGCATATTTCGATGATGTAGATCACTACAGGACAATAAAGGCAATGTGCAGGCTTTCATGTGGAGTTTGTGATAAGATAAATGACAAGGAAAGCAAAGGAACAAAGATAACAGCTGAGTTCAATAGCATCGAACAGCTGGAAAGTCATCTGTACCATCGGCATAGGCTGTTCATGTGTAGTCTGTGCTTGGAAGGTCGGAAGATATTTATATGTGAGCAAAAGATGTATAATAAGGCACAACTGAATCAACATTTAAAGACTGGTGACTCAGTGATTGATGGCAATGAATATGAAAGAGGTGGGTTCATGGGGCATCCTATGTGTGAATTTTGCCAGAACCCATTCTATGGAGAAAATGAACTGTACTCACATATGTCTAGGGAGCACTATACTTGCCACATATGCCAAAGGCTGCACACTGGACAGTATGAATACTACAAAGATTATGATCACTTAGAGATACATTTTCGTCAAGAGCATTTCTTATGTGAAAATGGGGCTTGCGTTGAAAGTAAATTTATTGTGTTTGCTACTGAAACTGAGATGAAGAAACATAATGCTGCAGAACACACAGGCTGTGCATCTCTCTTCAGGCGCAATGCTGTTCATCAGGGCAATGGGAATGATTGTCAAGGCAGAGAGCATAGTTATAATCATGATTCATTGGTCAATCAACGTTTTTGGGCTATTCAACCCAGTTTTCGGACAGTCATTGAAGAAAACATCAGTGATGCTTCATCAAGTGTGCAGAGATTTAACAAAGTAAAGGCGAGTGACACTGAGTCTGATGTTAATTCTTTTGACATATTAGCTGCACTTCAATCTGAGTCATCTCTAGGATGCAATCATGATTTAGGCCAAACCTCTAGGAATGGAATGCTAGAAGAATCATCATTTCCTCCTCTTCCATCAGCTGCAAGAAGGAGTAAACATAAATTTAACAATTGTTCAGAAGAAAGGAGGGAGAAAAAAATGGCAGCTTGCCTTCGCCACCAAAACAAAAGAACTTCTTCTGGTCTTAGTTCTCAGGCTTGGCACACAACAATTTATCAACCTACCTCATCAGGCAGCAGTTCTCACCAGTCAACTCTGGCAGCTGATCCTGCATCTCTGTCATTCTCTGATTTCCACTGTTTCTCCCGGAGCAAGTCGGCAACAGTTAATGGATGTATTTCATCTGGCCCTTCAGCCTCTTCTCAGGCTCCGTTAACTGCAGATGTTAAAATCATGCCAGTTGATGTGGCTAGTTCATTGAGAAATTTCAGTAGCACTAGTACGACCAACCACTCTGCTTCTGCTTCAAACCCGGTAGACACAGGGTCTTTGAGAAAATCTACTAAATTGCCTCCCATTTCAGTTACTTTGAATAACGAGGTTCAGTCAAGTGGTCAGCTGGTGCTGAAGGGAGAAGATGTTCAGAAAGCCAATAAGTTGCTTTTGGAAAAAATTCGTGCCACTGTAGGTTTTGATGATAATAAGTTAATTGATTTTAGGAAAGCATCTGCTGGTTTTCGACGAGGATCAATGAATTCTGGGGAATTCCTTGCCAAGGTGCATGAATTTGGCTTGTCCCATCTTACTCTTGAGCTAGCTAGACTCTGTCCTGATGCTCAGAAGCAAAAAGAACTCATTGAAACTTACTACTTAAATGCGAGAAGTTGTCACGATAAAGTTCATTTGTGCAATGACAGTGGTCAGCCTAAAAAGCAAAAGAACTCCAGAAAAGGTAAGGAGAAATGTGGAGAGGATGGGACAAATTTTAATCTGATTGATAATTCTATAAATGGCTTGAGTAATTTGCAGTTGAAGTGTAAGCCTTCTGATAGGGAAGTAAATGTTTTATCAGAACATGATTATTGTTGTGACAAAGGAAAGTCAAAGGTTTCAGTTGATGAAGATGAAATAGGCAATTCATCTTCTGCTAGACCATCAAGGATGGAGAAACGGAACAAAAATGTTTCTCAGTCAGCTGGGGCTGGTGGTGGTTCAAAACAAAACCTGGGGACTGGAGCAGGTGGTAACAAGCAGCAGCAGAAGATGCCAAAGTTCCTAAGGAAACGTCTTGGCAATGATGATGCTGCCGTTACAGACCTTGATGATTACGATCCTGTTTCCAGTAATGTACAAGAAAGATCAAATGGAAATAAGGAGCCTCCTAGGCAGCTGCCAGTTCGTGGAGTCTGGAGGAATGGAGGAGGCAAGAGACTTGTTGCAATGACACAGGGTAAACTTACAATTACAAAGTAG 2517 0.4132 MDDSCAVCAETLEWTAYGPCGHREVCSTCVIRLRFICTDNHCCICKSISNIIFVTKALGDYTRMINDFSVFPTNPREGKVGSYWYHEGTQAYFDDVDHYRTIKAMCRLSCGVCDKINDKESKGTKITAEFNSIEQLESHLYHRHRLFMCSLCLEGRKIFICEQKMYNKAQLNQHLKTGDSVIDGNEYERGGFMGHPMCEFCQNPFYGENELYSHMSREHYTCHICQRLHTGQYEYYKDYDHLEIHFRQEHFLCENGACVESKFIVFATETEMKKHNAAEHTGCASLFRRNAVHQGNGNDCQGREHSYNHDSLVNQRFWAIQPSFRTVIEENISDASSSVQRFNKVKASDTESDVNSFDILAALQSESSLGCNHDLGQTSRNGMLEESSFPPLPSAARRSKHKFNNCSEERREKKMAACLRHQNKRTSSGLSSQAWHTTIYQPTSSGSSSHQSTLAADPASLSFSDFHCFSRSKSATVNGCISSGPSASSQAPLTADVKIMPVDVASSLRNFSSTSTTNHSASASNPVDTGSLRKSTKLPPISVTLNNEVQSSGQLVLKGEDVQKANKLLLEKIRATVGFDDNKLIDFRKASAGFRRGSMNSGEFLAKVHEFGLSHLTLELARLCPDAQKQKELIETYYLNARSCHDKVHLCNDSGQPKKQKNSRKGKEKCGEDGTNFNLIDNSINGLSNLQLKCKPSDREVNVLSEHDYCCDKGKSKVSVDEDEIGNSSSARPSRMEKRNKNVSQSAGAGGGSKQNLGTGAGGNKQQQKMPKFLRKRLGNDDAAVTDLDDYDPVSSNVQERSNGNKEPPRQLPVRGVWRNGGGKRLVAMTQGKLTITK 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2710g00006 838 PANTHER ZINC FINGER PROTEIN 598 1 738 IPR044288 GO:0061630|GO:0072344
Gabi2710g00006 838 MobiDBLite consensus disorder prediction 513 535 - -
Gabi2710g00006 838 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Gabi2710g00006 838 MobiDBLite consensus disorder prediction 721 768 - -
Gabi2710g00006 838 ProSitePatterns Zinc finger C2H2 type domain signature. 198 219 IPR013087 -
Gabi2710g00006 838 MobiDBLite consensus disorder prediction 784 816 - -
Gabi2710g00006 838 MobiDBLite consensus disorder prediction 792 806 - -
Gabi2710g00006 838 MobiDBLite consensus disorder prediction 386 407 - -
Gabi2710g00006 838 SMART c2h2final6 251 280 IPR013087 -
Gabi2710g00006 838 SMART c2h2final6 108 144 IPR013087 -
Gabi2710g00006 838 SMART c2h2final6 196 219 IPR013087 -
Gabi2710g00006 838 SMART c2h2final6 220 250 IPR013087 -
Gabi2710g00006 838 MobiDBLite consensus disorder prediction 740 766 - -
Gabi2710g00006 838 MobiDBLite consensus disorder prediction 650 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2710g00006 Gabi-Chr2710 154379 159607 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2710g00006 1 823 C2H2 Transcription Factor Family AT3G62240 42.661 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2710g00006 K22381 - cave:132172751 832.017