Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2710g00004 ATGAATGAGAATGCAGGTGACTCCCAGAAGTGGACTAACAGCCCTGGATACACTAACGTAGTGAATAGTCCCTTCAAAACTCCTGTGTCTGCTAAAGGCGGAAGGACACATAATAAGCCAAAGGTTTCCAGTGAAGGCAGATCATGTCCTCCAACACCCATCCCAAATGCTGGTTCGCCTTCTCCTCTTACTCCCGCCGGCAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTAACAAAAAAGTTCATCAATTTGGTCAAGCATGCAGAGGATGGTATTCTTGACCTTAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATTTATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATCGAAAAGAAACTCAAGAACAGAATACATTGGAAGGGAGTTGAATCTTCTACATCTGGTGAGATGGATACTGATATCTCTATGCTTAAGGAAGAAGTTGAGAAACTTTCTTTTGAAGAGCAGAGATTAGATGACCAAATAAGGGAAATGCAAGAAAGGCTGAGGAGTTTGATTGACGATGAAAACAAACAGAAGTGGCTTTTTGTGACTGAAGAAGATATTAAAGGCCTACCTTGCTTCCAGCACAATGAAACTCTTATAGCAGTTAAAGCTCCACATGGAACCACCCTGGAGGTCCCTGATCCTGATGAGGCTGTTGACTATCCACAGAGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATCTCTATCTTATCAGCCAATTTGAAGAGAAATTTGAAGAGATTAATGGTGCTGAGCCCCCTATGAGCTTCCCACCTGCTTCAAGTTCAGGGTCCAATGAGCAACTTGTGACAGAAATGGTTCCTGCTGAATGCAGTGGAAAAGGACTTGAACCTCAAGCTGAGCTCTCTTCTCATACATGCTCTGATCTAAATGCTTCACAAGAGGTTGCTGGAGGCATGATGAAGATTGTCCCTTCAGAGGCAAACAACAACGCAGATTATTGGCTTCTATCAGATGCTGAAGTTAGCATAACCGATATATGGAGAACAGATTCTAGTCTTGATTGGAATGGGGTGGACATGCTTCATCCTGACTTTGGAATCATCCCAAGACCACAAACTCCAACTGGATTTGCTGAAGCGCCATCTACAGTAGCTAACACTAATCAGATGTGA 1176 0.4303 MNENAGDSQKWTNSPGYTNVVNSPFKTPVSAKGGRTHNKPKVSSEGRSCPPTPIPNAGSPSPLTPAGSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGVESSTSGEMDTDISMLKEEVEKLSFEEQRLDDQIREMQERLRSLIDDENKQKWLFVTEEDIKGLPCFQHNETLIAVKAPHGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDLYLISQFEEKFEEINGAEPPMSFPPASSSGSNEQLVTEMVPAECSGKGLEPQAELSSHTCSDLNASQEVAGGMMKIVPSEANNNADYWLLSDAEVSITDIWRTDSSLDWNGVDMLHPDFGIIPRPQTPTGFAEAPSTVANTNQM 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2710g00004 391 Coils Coil 148 182 - -
Gabi2710g00004 391 SUPERFAMILY "Winged helix" DNA-binding domain 70 133 IPR036390 -
Gabi2710g00004 391 SMART E2F_TDP_2 70 135 IPR003316 GO:0005667|GO:0006355
Gabi2710g00004 391 SUPERFAMILY E2F-DP heterodimerization region 148 253 IPR037241 -
Gabi2710g00004 391 CDD E2F_DD 151 253 IPR032198 GO:0046983
Gabi2710g00004 391 Gene3D - 64 138 IPR036388 -
Gabi2710g00004 391 FunFam E2F transcription factor 1 64 137 - -
Gabi2710g00004 391 Pfam E2F/DP family winged-helix DNA-binding domain 72 135 IPR003316 GO:0005667|GO:0006355
Gabi2710g00004 391 MobiDBLite consensus disorder prediction 1 26 - -
Gabi2710g00004 391 MobiDBLite consensus disorder prediction 1 65 - -
Gabi2710g00004 391 Gene3D - 141 253 - -
Gabi2710g00004 391 Pfam E2F transcription factor CC-MB domain 151 252 IPR032198 GO:0046983
Gabi2710g00004 391 PANTHER TRANSCRIPTION FACTOR E2F 9 354 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2710g00004 Gabi-Chr2710 106280 110799 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2710g00004 14 388 E2F-DP Transcription Factor Family AT2G36010 59.487 1.70e-144 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gabi2710g00004 E2F_CC-MB 1.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2710g00004 K06620 - gmx:100811762 641.728