Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi270g00014 ATGGCTAAACCGAAAGCTCCAAGGCGAACCCTAGAGTCATACACAGTCAAACACATAAACAAAACCATTAGAGCGGGCGATTGCGTGCTCATGCGACCCTCTGATCCGGGGAAACCGTCGTATGTGGCTAGGATCGAGCGGATCGAAGCTGACTCCCGAGGCGGCAACGTGAAGGTTAACGTCCGTTGGTACTACCGGCCGGAGGAGTCAATCGGAGGCCGCCGCCAGTTCCACGGCTCTAAGGAGGTTTTCCTCTCCGATCACTTCGATCTTCAGGGCGCCGACACCATCGAAGGCAAGTGTACGGTCCATAGTTTCAAGAGCTACACCAAGCTCGATGCAGTTGGGAATGACGATTTCTTCTGTCGCTTCGAGTACAATTCCTCCACCGGCGCCTTCAATCCTGATAGAGTTGCTGTGTATTGTAAATGCGAGATGCCCTACAACCCTGATGACTTAATGGTCCAGTGTGACGGCGAAGACTGCAAGGATTGGTTTCATCCTACTTGTATAGACATGACTGTGGAGGAAGCCAAAAGACTTGACCAGTTCTTTTGTGAAAGTTGTTCTCAAAAGAAGTTGCAAAATTCCCATTCTGCTTCGAGACTCTCAGATACAAAGGTTGATACTAAACGCCGTCGAAGGCAATAG 651 0.5023 MAKPKAPRRTLESYTVKHINKTIRAGDCVLMRPSDPGKPSYVARIERIEADSRGGNVKVNVRWYYRPEESIGGRRQFHGSKEVFLSDHFDLQGADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSSTGAFNPDRVAVYCKCEMPYNPDDLMVQCDGEDCKDWFHPTCIDMTVEEAKRLDQFFCESCSQKKLQNSHSASRLSDTKVDTKRRRRQ 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi270g00014 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Gabi270g00014 216 PANTHER OS08G0421900 PROTEIN 5 207 - -
Gabi270g00014 216 Pfam PHD-finger 141 191 IPR019787 -
Gabi270g00014 216 SUPERFAMILY FYVE/PHD zinc finger 130 194 IPR011011 -
Gabi270g00014 216 ProSitePatterns Zinc finger PHD-type signature. 142 189 IPR019786 -
Gabi270g00014 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 204 IPR013083 -
Gabi270g00014 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Gabi270g00014 216 Pfam BAH domain 22 136 IPR001025 GO:0003682
Gabi270g00014 216 Gene3D - 2 135 IPR043151 -
Gabi270g00014 216 SMART PHD_3 141 190 IPR001965 -
Gabi270g00014 216 FunFam Chromatin remodeling protein EBS 1 133 - -
Gabi270g00014 216 ProSiteProfiles Zinc finger PHD-type profile. 139 192 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi270g00014 Gabi-Chr270 104042 108536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi270g00014 41 139 Core DNA Replication Machinery Family AT4G14700 31.313 8.64e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi270g00014 BAH 2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi270g00014 K25868 - gmx:100787968 413.69