Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi270g00012 ATGGCAACTTATTACACAAGTTCAAGTAATCAAAGAGATGCCGTGCCTATGCTCTGTCTTAGGGAGCCTTTGCCTAGTTCGTATACTGAGACACCAGTTCTTCCAAGCAATATGACATTATATATGAGCTCTGGTTCATATTCAGAAGCATTGTCTGGTACTTCTCAGCAGCAAAATAATTGCTTTGTGATTCCATCAATAGGTGCTTCACATTCCACTCCTGAACGGCAAGAAATCTTAGCAAATATTGGGGGGTTCCAAACTGGGGTTCATGATTTCAGTGCATGGAGGGAGGGTAGAAATGACATGTTAGTCAGACAACAACCTATGGATGGACAGAACTTGCAGGGTCAGGGATTATCTCTCAGCCTTGGAACCCAAATACCCTCAGGAATACAAATGCCTTCTCTCCATGATAGGAATCATAATTTAAGTTTTGATTCGTTTTTGGGTACTAATCCATCAATTTCAGGTAATGAGGCCTATAAAAGTGGCTCATCTATGGATGAATGTATGAGACATTCTGAAAATTTTCCACCTGGTTTATCTGAAGCTAGTCAAGATTTGAACAGGGGGGATTTTTCCTTCCATGGAATGTCCAGTGCTGGAAGAACGGTTCCTAATTCCAAATACCTCAAGGCAGCACAACAACTGCTTGATGAAGTTGTTGACATCCGAAAAGCTATGAAACGACCTGATATGAAAAGTCATAGCACACATGAGGACTCTAAGAAGAATTCCAAGGAGGATGATGAACAACTAGAGAATGAAAGATCTTCTGCAAATGGAGTGCCTAATTCTCAAGGTTCAGCTTGTAACTCCTCTTCTGAGCTTTCACATGCTGAAAAGCAAGATCTGCACAACAAGTTAACAAAGCTTTTGTCAATGTTGGATGAGGTTGACAGTAGGTACAAACAATATTATCATCAGATGCAGATTGTGGCATCATCATTTGATGTGATAGCAGGCTGTGGGGCAGCTAAACCATACACAGCACTTGCTCTTCAAACCATTTCATGCCATTTTCGGTGTTTGCGTGATGCAATTACTGGCCAAATCAGTGCAACACAAAAAAACCTTGGGGAGCAAGATGCTTCTGGTAATAATAAAGGAGTTGGAATGTCAAGACTTAGGTATGTGGACCAACAGATCCGGCAACAGAGGGCTCTTCAGCAGCTTGGCATGATGCAACATACATGGAGGCCACAAAGGGGGCTCCCAGAAAGCTCTGTTTCAATTCTTCGTGCTTGGCTGTTTGAGCATTTCCTTCATCCCTATCCAAAGGATTCTGATAAGATCATGCTAGCAAGACAGACAGGCTTGACCAGAAGTCAGGTCTCAAATTGGTTCATAAATGCGCGGGTTCGTCTATGGAAGCCTATGATTGAGGAGATGTACAAGCAAGAGATTTGCGACGCTGACATAGACTCAAGTTCTTCATCTGAAAATGCATCCAAGGTAACAAAAAGTGATGTCAAGACCTCCAATGAGATGTGCGATGATTCGCAGCACTTTCAAAGTTCAATAGCCAATAAGAATTACAGTGGTGGACAAACTAAAGACCTCAGATCTTCATCTGATCGAGGTCTCGACACAGAAATCATGGCTTCCACTGGTTCAGCTAGTCTACAAAGCATAGGTCATGAGGCTGAAACTGAGCATAGGTTAGGAAAGCAGACCGAGGAGCAAAGGCCAAACTTCTATGATTGTGGTCTCTTCCCAGATGACACAGTTGTTCAGCCTGGTGGAACTAATGACAGGTTTATGACGTGCCAAATGTCGGAGTTTGGGAGGTTCAAGTCAGGAAGTGGAGTGTCTCTAACATTGGGTTTGCAGCATTGTGAAGGAGGTAACTATTTGGATGGTGAGACCCATCTTAGTTTGGTTTCCATGAAGGAGGATGACATCTACAATGCAGCTGCAGCTTCTAACATAGGAGCTGAGACAGCAGAACTTGAGTGCATCAGTGCTGGAAACCAACAACAAAGGTTCAGTTCTCCCCATATGTCACATGATTTTGTAGTATGA 2028 0.429 MATYYTSSSNQRDAVPMLCLREPLPSSYTETPVLPSNMTLYMSSGSYSEALSGTSQQQNNCFVIPSIGASHSTPERQEILANIGGFQTGVHDFSAWREGRNDMLVRQQPMDGQNLQGQGLSLSLGTQIPSGIQMPSLHDRNHNLSFDSFLGTNPSISGNEAYKSGSSMDECMRHSENFPPGLSEASQDLNRGDFSFHGMSSAGRTVPNSKYLKAAQQLLDEVVDIRKAMKRPDMKSHSTHEDSKKNSKEDDEQLENERSSANGVPNSQGSACNSSSELSHAEKQDLHNKLTKLLSMLDEVDSRYKQYYHQMQIVASSFDVIAGCGAAKPYTALALQTISCHFRCLRDAITGQISATQKNLGEQDASGNNKGVGMSRLRYVDQQIRQQRALQQLGMMQHTWRPQRGLPESSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMIEEMYKQEICDADIDSSSSSENASKVTKSDVKTSNEMCDDSQHFQSSIANKNYSGGQTKDLRSSSDRGLDTEIMASTGSASLQSIGHEAETEHRLGKQTEEQRPNFYDCGLFPDDTVVQPGGTNDRFMTCQMSEFGRFKSGSGVSLTLGLQHCEGGNYLDGETHLSLVSMKEDDIYNAAAASNIGAETAELECISAGNQQQRFSSPHMSHDFVV 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi270g00012 675 MobiDBLite consensus disorder prediction 258 279 - -
Gabi270g00012 675 MobiDBLite consensus disorder prediction 229 284 - -
Gabi270g00012 675 MobiDBLite consensus disorder prediction 548 562 - -
Gabi270g00012 675 SMART prehox3 200 351 IPR006563 -
Gabi270g00012 675 MobiDBLite consensus disorder prediction 229 257 - -
Gabi270g00012 675 ProSiteProfiles 'Homeobox' domain profile. 397 460 IPR001356 GO:0003677
Gabi270g00012 675 FunFam BEL1-like homeodomain protein 4 403 465 - -
Gabi270g00012 675 SUPERFAMILY Homeodomain-like 401 466 IPR009057 -
Gabi270g00012 675 Pfam Homeobox KN domain 417 456 IPR008422 GO:0003677|GO:0006355
Gabi270g00012 675 MobiDBLite consensus disorder prediction 539 565 - -
Gabi270g00012 675 Pfam Associated with HOX 206 350 IPR006563 -
Gabi270g00012 675 MobiDBLite consensus disorder prediction 475 500 - -
Gabi270g00012 675 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 123 483 - -
Gabi270g00012 675 SMART HOX_1 400 464 IPR001356 GO:0003677
Gabi270g00012 675 MobiDBLite consensus disorder prediction 509 523 - -
Gabi270g00012 675 MobiDBLite consensus disorder prediction 509 528 - -
Gabi270g00012 675 Gene3D - 396 473 - -
Gabi270g00012 675 MobiDBLite consensus disorder prediction 475 492 - -
Gabi270g00012 675 CDD homeodomain 400 461 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi270g00012 Gabi-Chr270 87630 93580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi270g00012 27 675 Homeobox Transcription Factor Family AT4G34610 38.880 4.35e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi270g00012 POX 3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi270g00012 - - gmx:100801522 1009.21