Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2707g00017 ATGAACGAGAAGGCCAACGTTTCTAAGGAGCTCAACGCCAAGCACAAAAAGATACTGGAAGGACTTCTTAAATTACCGGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGCCCAAGATGGGCTAGTGTCAATCTCGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTCTAGGGGTACATATATCAAAGGTTCGCTCTGCAACTTTGGACACCTGGCTCCCGGAGCAGGTTGCTTTCATTCAATCGATGGGAAACGAGAAAGCAAATAGTTACTGGGAGGCAGAACTACCCCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAAAAGAGATGGGTTGCAAGGGACGGGAAACCCAAATCACCTTCTAGTCTGCGAGAAGAGATAACTCCTTCACATTGGCAAAGGCCTGTGGAAAGAGGTGGGCATGCCTATGCAGTAGCGTCTGAGAATACTTTTGAGGAAAGGAAGAAAAGCCAACCATCAAATGTAATTCCTGCTACAAGAATTAGTGTTCCTGCTCCTCCCAAAGGACCTGAGCTGGTAACTCCTGTGACAAAACCTAAGCATATTGAGAAAGTGGAACCTGTGGAACCACACCCTCAAGCTGGAACTTCAAAGCAGACTACTGGTACAGCTGAAAATTCCCCTCCAAAAGTTGACTTTGCTACAGACCTTTTTGACATGTTGTCCATGGATGGTCCAAGTGAAACGGGCTCAGGGGAAGCTGGTGCTACTACTGATGATAATAACTGGGCAGGCTTTCAGTCTGCTGCAGAGGCATCAACAGCCGAAAAGACTGATGCCATGAAAGCAGTTGAGAGTACACCCCAGTCCACATCTGGAATTGAGGATCTGTTTAAAGATTCACCTTCAGCGACCCCAAGCTTAGCTCCAGAAAAACCACAAAAAGATGTAAAAAATGATATCATGAGCCTCTTTGAGAAGACCGATATGGTGTCTCCATTTTCTATGCATCAACAGCAGCTGGCCATGCTGGCACAGCAACAGTCTCTTCTAATGGCTGCTGCAGCCAAGTCTGCTGGTGGGGATTCCAAGTATCCTGCTAGTGTACACCCGCAGCTGGCCATGCTAGCACAGCAACAGTCCCTTCTGATGGCTGCTGCAGCTAAATCTGCTGCTGGGGATTCCAAGTATCCTGCTAGCTTACAACAACCTGGGTCCAATATGCCTGTCCAAAGTTGGCCAGCTTCTGGCTACCCAATTCCTGGAGTAATGCCCATGGGTGGTCAGGGAGAGTTGCAGAAACTTATTCAGACGATGAACATGACTGCAGCGCATCCAGCAGGGAGCTCGGTTCAGTATCCACCATCTAGCTTCTATACTATGGGGCAAGTTGCTCCAGTAAATGGTATGATGACAACGGGAGTGAGTAAAGCTGAGGCAGCAGCTCCGGTATCATCAACCACTTCACAGACGGAGAAGGAATATGACTTTTCCTCTTTAACCCAAGGAATGTTTGCGAAACACTGA 1524 0.4698 MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVARDGKPKSPSSLREEITPSHWQRPVERGGHAYAVASENTFEERKKSQPSNVIPATRISVPAPPKGPELVTPVTKPKHIEKVEPVEPHPQAGTSKQTTGTAENSPPKVDFATDLFDMLSMDGPSETGSGEAGATTDDNNWAGFQSAAEASTAEKTDAMKAVESTPQSTSGIEDLFKDSPSATPSLAPEKPQKDVKNDIMSLFEKTDMVSPFSMHQQQLAMLAQQQSLLMAAAAKSAGGDSKYPASVHPQLAMLAQQQSLLMAAAAKSAAGDSKYPASLQQPGSNMPVQSWPASGYPIPGVMPMGGQGELQKLIQTMNMTAAHPAGSSVQYPPSSFYTMGQVAPVNGMMTTGVSKAEAAAPVSSTTSQTEKEYDFSSLTQGMFAKH 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2707g00017 507 CDD ArfGap 19 117 - -
Gabi2707g00017 507 MobiDBLite consensus disorder prediction 212 227 - -
Gabi2707g00017 507 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Gabi2707g00017 507 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Gabi2707g00017 507 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Gabi2707g00017 507 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Gabi2707g00017 507 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Gabi2707g00017 507 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Gabi2707g00017 507 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 368 IPR044520 GO:0005096
Gabi2707g00017 507 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Gabi2707g00017 507 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Gabi2707g00017 507 MobiDBLite consensus disorder prediction 282 297 - -
Gabi2707g00017 507 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Gabi2707g00017 507 MobiDBLite consensus disorder prediction 161 314 - -
Gabi2707g00017 507 MobiDBLite consensus disorder prediction 250 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2707g00017 Gabi-Chr2707 95262 106187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2707g00017 16 123 C2H2 Transcription Factor Family AT4G05330 49.138 4.05e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2707g00017 K12486 - gmx:100807561 797.734