Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2700g00017 ATGGCTCAACAAACCAACGGTGCCGATCTGAATCAGCAGCCTAACCAGCACCATCAGCAACAGTGGGCGCAGCCGCATCAGTATCAGCAACAATGGATGTCCATGCAGTATCCCGCCACCGCCATGGCCATGATGCAACAGCAGATGATGATGTACCCTCAGCATTACATGCCTTATGTCCATCACCATTACCAGCCGCCTCACCAGCAGCAGCAGCAGCAGCAGCAGAACCCTACGCCGCCGCCGCCGACGCACCACCACCACAACAACCACCACCACCAGCAGAAGCACCAGCAGCAGCAAGTCTCCCCCGATGAGATCAGGACGATCTGGCTCGGTGACCTTCACCATTGGATGGATGAGAGCTACCTCCATAACTGCTTCGCTTACACAGGAGAGGTTGTATCAGCCAAGGTCATACGGAATAAGCAAACCGGTCAGTCGGAGGGATATGGATTTCTGGAGTTCTATTCGCGAGCAACAGCTGAGAAAGTCTTGCAGAACTACAATGGTACAATGATGCCGAATACAGATCAGGCATTTCGTCTAAATTGGGCAACATTCAGTGCAGGTGAAAGGCGTACTAGTACTGAGGCTAGTTCTGATCTCTCTATATTTGTGGGGGACTTGGCGATAGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCTAGCAGATATTCATCCATCAAGGGAGCAAAAGTTGTCATCGATTCTAATACTGGCCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAATGAAAGGACAAGGGCAATGTCTGAAATGAATGGGGTTTACTGTTCTAGTAGGCCTATGCGAATAGGTGTTGCAACGCCCAAGAAAACTTACGGCTATCAACCACAATATTCTTCACAAGCTGTGGTGTTGGCTGGTGGACACTCATCTAATGGTGCAGTGGCCCAAGGTTCCCAGTCTGAAGGGGATTTTAACAACACAACTATATTTGTTGGAGGACTTGATTCTGACATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCCGTGGGTAAAGGGTGTGGTTTTGTTCAATTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGCATTGAATGGGACAATAATTGGGAAGCAGACAGTGCGTCTTTCCTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGACTGATTCCAATGGAAGCCATTATGCTGGTCAGGGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATATAGCTATGCATCCTGCTGCTACAATTCAAGGAGCTTCCTAA 1320 0.4811 MAQQTNGADLNQQPNQHHQQQWAQPHQYQQQWMSMQYPATAMAMMQQQMMMYPQHYMPYVHHHYQPPHQQQQQQQQNPTPPPPTHHHHNNHHHQQKHQQQQVSPDEIRTIWLGDLHHWMDESYLHNCFAYTGEVVSAKVIRNKQTGQSEGYGFLEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGERRTSTEASSDLSIFVGDLAIDVTDAMLQETFASRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMSEMNGVYCSSRPMRIGVATPKKTYGYQPQYSSQAVVLAGGHSSNGAVAQGSQSEGDFNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFADRKNAEEAIQALNGTIIGKQTVRLSWGRSPGNKHWRTDSNGSHYAGQGYGGHGFAVRQNQDIAMHPAATIQGAS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2700g00017 439 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 93 398 - -
Gabi2700g00017 439 SUPERFAMILY RNA-binding domain, RBD 203 393 IPR035979 GO:0003676
Gabi2700g00017 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 394 IPR000504 GO:0003723
Gabi2700g00017 439 CDD RRM3_NGR1_NAM8_like 321 392 - -
Gabi2700g00017 439 FunFam Polyadenylate-binding protein RBP47B 189 293 - -
Gabi2700g00017 439 SUPERFAMILY RNA-binding domain, RBD 71 188 IPR035979 GO:0003676
Gabi2700g00017 439 MobiDBLite consensus disorder prediction 65 103 - -
Gabi2700g00017 439 CDD RRM1_SECp43_like 109 189 - -
Gabi2700g00017 439 Gene3D - 302 425 IPR012677 -
Gabi2700g00017 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 274 IPR000504 GO:0003723
Gabi2700g00017 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 177 IPR000504 GO:0003723
Gabi2700g00017 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 387 IPR000504 GO:0003723
Gabi2700g00017 439 FunFam Polyadenylate-binding protein RBP47B 107 187 - -
Gabi2700g00017 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 282 IPR000504 GO:0003723
Gabi2700g00017 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 188 IPR000504 GO:0003723
Gabi2700g00017 439 SMART rrm1_1 204 278 IPR000504 GO:0003723
Gabi2700g00017 439 SMART rrm1_1 109 184 IPR000504 GO:0003723
Gabi2700g00017 439 SMART rrm1_1 323 390 IPR000504 GO:0003723
Gabi2700g00017 439 MobiDBLite consensus disorder prediction 1 25 - -
Gabi2700g00017 439 Gene3D - 56 193 IPR012677 -
Gabi2700g00017 439 Gene3D - 194 291 IPR012677 -
Gabi2700g00017 439 FunFam Polyadenylate-binding protein RBP47 304 420 - -
Gabi2700g00017 439 CDD RRM2_SECp43_like 202 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2700g00017 Gabi-Chr2700 175845 181051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2700g00017 110 401 Eukaryotic Initiation Factors Gene Family AT4G34110 30.201 1.86e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2700g00017 - - gmx:100798089 639.802