LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2700g00013	ATGGGGGTTTGCACTTCGAAGCCGCAGAAGCGGAACCCATATGCCCTTCGGGAACCTGAAGGTGACCCATGTGACCCTTCGCAAATCCCGAAAACCCCACTCAGTCCCAACTCCAACAACCACCGCCGGAAAGATGACGTCATCCCCGCCGGGAAGCAGTCTCCGTTCTTCCCGTTCTACAGTCCTAGCCCTGCTCACTTTTTCAAGAAGTCTCCGGCCGCGAGCTCGACGCCGAGGAGGTTTTTCCGGCGCCCTTTCCCTCCGCCTTCTCCGGCCAAGCACATAAAGGCCGTCTTGGCGAGGAGACAGGGGAAGAAAACCACCACGGCGATACCGGAGGAGGGGGAGGAGGAGGCCGGAGGTGCTGCGGATTTGGACAAGAGGTTTGGGTTTTCGAAGGAGTTGAGTAGTAGGTTGGAGGTTGGAGAAGAAGTGGGTAGAGGGCATTTTGGGTATACTTGTTCTGCTAGGTTCAAGAAGGGTGAGCTTAAGGGTCAACAAGTTGCAGTTAAGGTCATCCCAAAAGCAAAGATGACTACAGCAATTGCAATTGAAGATGTGAGAAGGGAGGTGAAAATATTGCGAGCTTTGAATGGACACAGCAATCTGGTACAATTCTATGATGCATTTGAAGACCAAGATAATGTCTACATTGTAATGGAGTTATGTGAAGGGGGGGAGCTTTTAGATATGATACTATCAAGAGGAGGGAAATACACAGAAGATGATGCAAAGGCTGTCATGGTACAGATACTAAATGTTGTTGCATTTTGTCATCTTCAGGGTGTGGTGCACCGAGATCTTAAGCCAGAGAATTTTTTGTATACTTCAAAGGATGAAAGTTCTGAGTTAAAAGCAATAGACTTTGGGTTATCAGATTTTGTCAGACCAGATGAAAGGCTTAATGACATTGTTGGAAGTGCTTACTATGTCGCCCCTGAAGTTCTCCATAGATCTTACACCACAGAGGCTGATGTGTGGAGTATAGGTGTGATAGCATATATTCTATTATGTGGTAGTCGCCCATTTTGGGCTCGAACAGAGTCTGGTATTTTTCGGGCAGTTTTGAAAGCTGATCCAAGCTTTGATGAAGCTCCCTGGCCATCTTTATCCTTAGAAGCTAAAGATTTTGTCAAACGGCTATTGAATAAGGATCCACGGAAGCGAATATCTGCTGCTCAGGCTCTAAGTCATCCTTGGATACGGAATTACAATAATGTAAAAGTTCCACTTGATATTTTAATATTTAAGCTCATGAAGACTTATATGAGGTCCTCATCCTTGCGTAAGGCTGCCTTAAGGGCCTTGTCAAAGACATTGACTGCTGATGAACTATATTATCTGAGGGAGCAATTTGCACTGTTGGAACCAAGCAAAAATGGCAGCATATCCTTAGATAACATTAGCAAGGCCTTGATGAAACGTGCAACAGATGCCATGAAAGAGTCTCGCATCCCTGACCTTCTTACCTCGCTGAATTCATTACAATATAGAAGGATGGATTTTGAAGAATTTTGTGCAGCTGCATTAAGTGTACATCAACTTGAAGCTCTTGATCGTTGGGAGCAACATGCTCGCTGTGCATATGAACTTTTCGAGAAAGATGGAAACAGGGCTATTGTCATTGAAGAACTTGCTTCAGAACTTGGACTTGGTCCTTCTATCCCAGTTCACGTTGTTCTTCATGACTGGATACGCCACACTGATGGGAAGTTAAGCTTTCTTGGGTTTGTCAAATTATTACATGGTGTATCTAGCCGAAGCATTGCAAAGGTTCAATAA	1782	0.4512	MGVCTSKPQKRNPYALREPEGDPCDPSQIPKTPLSPNSNNHRRKDDVIPAGKQSPFFPFYSPSPAHFFKKSPAASSTPRRFFRRPFPPPSPAKHIKAVLARRQGKKTTTAIPEEGEEEAGGAADLDKRFGFSKELSSRLEVGEEVGRGHFGYTCSARFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHSNLVQFYDAFEDQDNVYIVMELCEGGELLDMILSRGGKYTEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTSKDESSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYTTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSLEAKDFVKRLLNKDPRKRISAAQALSHPWIRNYNNVKVPLDILIFKLMKTYMRSSSLRKAALRALSKTLTADELYYLREQFALLEPSKNGSISLDNISKALMKRATDAMKESRIPDLLTSLNSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSIAKVQ	593

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2700g00013	593	Gene3D	-	441	510	-	-
	Gabi2700g00013	593	SUPERFAMILY	Protein kinase-like (PK-like)	137	439	IPR011009	-
	Gabi2700g00013	593	FunFam	CDPK-related kinase 1	132	227	-	-
	Gabi2700g00013	593	CDD	STKc_CAMK	140	400	-	-
	Gabi2700g00013	593	SMART	serkin_6	139	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2700g00013	593	PANTHER	SERINE/THREONINE-PROTEIN KINASE	125	568	-	-
	Gabi2700g00013	593	SUPERFAMILY	EF-hand	429	583	IPR011992	-
	Gabi2700g00013	593	Pfam	Protein kinase domain	140	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2700g00013	593	Gene3D	-	419	580	-	-
	Gabi2700g00013	593	MobiDBLite	consensus disorder prediction	1	54	-	-
	Gabi2700g00013	593	ProSiteProfiles	Protein kinase domain profile.	139	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2700g00013	593	Gene3D	Phosphorylase Kinase; domain 1	141	227	-	-
	Gabi2700g00013	593	FunFam	CDPK-related kinase 1	437	510	-	-
	Gabi2700g00013	593	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	263	275	IPR008271	GO:0004672\|GO:0006468
	Gabi2700g00013	593	ProSitePatterns	Protein kinases ATP-binding region signature.	145	171	IPR017441	GO:0005524
	Gabi2700g00013	593	FunFam	Calcium-dependent protein kinase SK5	311	406	-	-
	Gabi2700g00013	593	FunFam	CDPK-related kinase 3	131	303	-	-
	Gabi2700g00013	593	Gene3D	Transferase(Phosphotransferase) domain 1	228	413	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2700g00013	Gabi-Chr2700	144758	150719	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2700g00013	1	589	EF-hand Containing Proteins	AT3G50530	72.642	0.0	931

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Gabi2700g00013		Pkinase	1.7e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2700g00013	K13412		-	gmx:100798913	1045.03