Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2700g00012 ATGGGGGTTTGCACTTCGAAGCCGCAGAAGCGGAACCCATATGCCCTTCGGGAACCTGAAGGTGACCCATGTGACCCTTCGCAAATCCCGAAAACCCCACTCAGTCCCAACTCCAACAACCACCGCCGGAAAGATGACGTCATCCCCGCCGGGAAGCAGTCTCCGTTCTTCCCGTTCTACAGTCCTAGCCCTGCTCACTTTTTCAAGAAGTCTCCGGCGTCGGCGGCTGCGGAGGGAGGGAGCAGGAGCGCGAGCTCGACGCCGAGGAGGTTTTTCCGGCGCCCTTTCCCTCCGCCTTCTCCGGCCAAGCACATAAAGGCCGTCTTGGCGAGGAGACAGGGGAAGAAAACCACCACGGCGATACCGGAGGAGGGGGAGGAGGAGGCCGGAGGTGCTGCGGATTTGGACAAGAGGTTTGGGTTTTCGAAGGAGTTGAGTAGTAGGTTGGAGGTTGGAGAAGAAGTGGGTAGAGGGCATTTTGGGTATACTTGTTCTGCTAGGTTCAAGAAGGGTGAGCTTAAGGGTCAACAAGTTGCAGTTAAGGTCATCCCAAAAGCAAAGATGACTACAGCAATTGCAATTGAAGATGTGAGAAGGGAGGTGAAAATATTGCGAGCTTTGAATGGACACAGCAATCTGGTACAATTCTATGATGCATTTGAAGACCAAGATAATGTCTACATTGTAATGGAGTTATGTGAAGGGGGGGAGCTTTTAGATATGATACTATCAAGAGGAGGGAAATACACAGAAGATGATGCAAAGGCTGTCATGGTACAGATACTAAATGTTGTTGCATTTTGTCATCTTCAGGGTGTGGTGCACCGAGATCTTAAGCCAGAGAATTTTTTGTATACTTCAAAGGATGAAAGTTCTGAGTTAAAAGCAATAGACTTTGGGTTATCAGATTTTGTCAGACCAGATGAAAGGCTTAATGACATTGTTGGAAGTGCTTACTATGTCGCCCCTGAAGTTCTCCATAGATCTTACACCACAGAGGCTGATGTGTGGAGTATAGGTGTGATAGCATATATTCTATTATGTGGTAGTCGCCCATTTTGGGCTCGAACAGAGTCTGGTATTTTTCGGGCAGTTTTGAAAGCTGATCCAAGCTTTGATGAAGCTCCCTGGCCATCTTTATCCTTAGAAGCTAAAGATTTTGTCAAACGGCTATTGAATAAGGATCCACGGAAGCGAATATCTGCTGCTCAGGCTCTAAGTCATCCTTGGATACGGAATTACAATAATGTAAAAGTTCCACTTGATATTTTAATATTTAAGCTCATGAAGACTTATATGAGGTCCTCATCCTTGCGTAAGGCTGCCTTAAGGGCCTTGTCAAAGACATTGACTGCTGATGAACTATATTATCTGAGGGAGCAATTTGCACTGTTGGAACCAAGCAAAAATGGCAGCATATCCTTAGATAACATTAGCAAGGCCTTGATGAAACGTGCAACAGATGCCATGAAAGAGTCTCGCATCCCTGACCTTCTTACCTCGCTGAATTCATTACAATATAGAAGGATGGATTTTGAAGAATTTTGTGCAGCTGCATTAAGTGTACATCAACTTGAAGCTCTTGATCGTTGGGAGCAACATGCTCGCTGTGCATATGAACTTTTCGAGAAAGATGGAAACAGGGCTATTGTCATTGAAGAACTTGCTTCAGAACTTGGACTTGGTCCTTCTATCCCAGTTCACGTTGTTCTTCATGACTGGATACGCCACACTGATGGGAAGTTAAGCTTTCTTGGGTTTGTCAAATTATTACATGGTGTATCTAGCCGAAGCATTGCAAAGGTTCAATAA 1812 0.4564 MGVCTSKPQKRNPYALREPEGDPCDPSQIPKTPLSPNSNNHRRKDDVIPAGKQSPFFPFYSPSPAHFFKKSPASAAAEGGSRSASSTPRRFFRRPFPPPSPAKHIKAVLARRQGKKTTTAIPEEGEEEAGGAADLDKRFGFSKELSSRLEVGEEVGRGHFGYTCSARFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHSNLVQFYDAFEDQDNVYIVMELCEGGELLDMILSRGGKYTEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTSKDESSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYTTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSLEAKDFVKRLLNKDPRKRISAAQALSHPWIRNYNNVKVPLDILIFKLMKTYMRSSSLRKAALRALSKTLTADELYYLREQFALLEPSKNGSISLDNISKALMKRATDAMKESRIPDLLTSLNSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSIAKVQ 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2700g00012 603 Gene3D - 429 590 - -
Gabi2700g00012 603 Gene3D Phosphorylase Kinase; domain 1 151 237 - -
Gabi2700g00012 603 Gene3D Transferase(Phosphotransferase) domain 1 238 423 - -
Gabi2700g00012 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Gabi2700g00012 603 SUPERFAMILY EF-hand 439 593 IPR011992 -
Gabi2700g00012 603 MobiDBLite consensus disorder prediction 111 130 - -
Gabi2700g00012 603 Pfam Protein kinase domain 150 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2700g00012 603 Gene3D - 451 520 - -
Gabi2700g00012 603 MobiDBLite consensus disorder prediction 71 102 - -
Gabi2700g00012 603 CDD STKc_CAMK 150 410 - -
Gabi2700g00012 603 SUPERFAMILY Protein kinase-like (PK-like) 147 449 IPR011009 -
Gabi2700g00012 603 PANTHER SERINE/THREONINE-PROTEIN KINASE 135 578 - -
Gabi2700g00012 603 ProSiteProfiles Protein kinase domain profile. 149 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2700g00012 603 SMART serkin_6 149 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2700g00012 603 FunFam CDPK-related kinase 3 141 313 - -
Gabi2700g00012 603 FunFam CDPK-related kinase 1 142 237 - -
Gabi2700g00012 603 FunFam CDPK-related kinase 1 447 520 - -
Gabi2700g00012 603 ProSitePatterns Protein kinases ATP-binding region signature. 155 181 IPR017441 GO:0005524
Gabi2700g00012 603 FunFam Calcium-dependent protein kinase SK5 321 416 - -
Gabi2700g00012 603 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2700g00012 Gabi-Chr2700 144758 150719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2700g00012 1 599 EF-hand Containing Proteins AT3G50530 72.457 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi2700g00012 Pkinase 1.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2700g00012 K13412 - gmx:100798913 1028.85