Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2700g00003 ATGGGTTCGGTTCCTGCAGAACTGAGCTTGGATTTAAGACCTACTTTTGTTCCCAAAACCATCACTGATTTCCTCTACGACCTCTCCACAATCCCATGTGCCCCCGATAAGCTCTCAAGGCTCAACGATTTCCTCGCCCGATTGGAAGACGAGCTCAGAAAGATCGACGCTTTCAAACGCGAGCTCCCTCTCTGCATGCTCCTCTTAAACGACGCAATTTTAGCTTTGAAGGAGGAATCGGAAAAATGCAGGCCTCATAATTCTCTGCCAGTGTTGGAAGAGTTTATTCCCTTAAAGAAAGAATGTGATCAGATTGAGGAAAACAATAACAAGGACAATGAATGCAGAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTCTGGAACAACACTACTACAAATAATGTCTCTGATAAAAAACAACAACATCATAAATCAGAAACCAAGATAAATGAAGAAGAAGGGCAATCTGTGGCCGAGGACCCTTTCCAATCTTGTAGCAATAGAAATGGAGGAAGGGCTTTTATGCCTTTCTCCACTTACCCTTCTGTCCCTACCACAACAGTGGCACTGACAGCAACCAAAGAAGAGAAGGAAGGCACTGTTTTGAATAGACTCTCTCTTCTAACCCCTGGGGTTAAAAGCTTGAGGGGATCCAGAACCAGCTCCAACAGGGTAGTTCCTTCATCTCCTCCTCCTATTCTCCACACAAGCTTGCGTGCAGGATCGCTTCAGCAGCAACAAAATTCTAGAAAACAAAGGAGATGCTGGTCGCCAGAGTTGCACCGTCGATTTGTTAATGCCTTGCAGAAGTTAGGAGGTTCTCAAGTGGCAACACCAAAGCAAATTAGAGAACTCATGCAGGTTGATGGCCTGACCAACGATGAAGTGAAGAGCCATTTACAAAAATACAGACTTCATACGCGGAGACTTCCAGCTTCAAGTGCTAATCAGCCTGTTGTAGTTCTTGGAGGTTTGTGGATGTCGCAAGATCAGTACAATGACTCTTCAAAAGGTAGCAGTTCGGTGTCTGGTTCCCCTCAAAGTCCCCTTCATTTAGCTTCAGGATCACGGGGACGGACATCCCCAACTGAGGGTGACAGCATGGAAGACGATGAAGATGCAAAATCCGAGAGTTATAGCTGGAAAAGTCACATTCACAGAGCTGGAAAAGTTGATGTATAG 1185 0.4515 MGSVPAELSLDLRPTFVPKTITDFLYDLSTIPCAPDKLSRLNDFLARLEDELRKIDAFKRELPLCMLLLNDAILALKEESEKCRPHNSLPVLEEFIPLKKECDQIEENNNKDNECRDKKNWMSSVQLWNNTTTNNVSDKKQQHHKSETKINEEEGQSVAEDPFQSCSNRNGGRAFMPFSTYPSVPTTTVALTATKEEKEGTVLNRLSLLTPGVKSLRGSRTSSNRVVPSSPPPILHTSLRAGSLQQQQNSRKQRRCWSPELHRRFVNALQKLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRLPASSANQPVVVLGGLWMSQDQYNDSSKGSSSVSGSPQSPLHLASGSRGRTSPTEGDSMEDDEDAKSESYSWKSHIHRAGKVDV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2700g00003 394 MobiDBLite consensus disorder prediction 333 363 - -
Gabi2700g00003 394 MobiDBLite consensus disorder prediction 375 394 - -
Gabi2700g00003 394 MobiDBLite consensus disorder prediction 131 170 - -
Gabi2700g00003 394 Coils Coil 41 61 - -
Gabi2700g00003 394 SUPERFAMILY Homeodomain-like 250 310 IPR009057 -
Gabi2700g00003 394 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 384 IPR044787 GO:0003700|GO:0006355
Gabi2700g00003 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 249 309 IPR017930 -
Gabi2700g00003 394 NCBIfam myb-like DNA-binding domain, SHAQKYF class 252 307 IPR006447 GO:0003677
Gabi2700g00003 394 FunFam Myb family transcription factor 251 309 - -
Gabi2700g00003 394 MobiDBLite consensus disorder prediction 214 231 - -
Gabi2700g00003 394 MobiDBLite consensus disorder prediction 333 394 - -
Gabi2700g00003 394 MobiDBLite consensus disorder prediction 214 234 - -
Gabi2700g00003 394 Gene3D - 251 309 - -
Gabi2700g00003 394 MobiDBLite consensus disorder prediction 138 156 - -
Gabi2700g00003 394 Pfam Myb-like DNA-binding domain 254 305 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2700g00003 Gabi-Chr2700 69209 71946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2700g00003 6 328 G2-like Transcription Factor Family AT2G03500 41.761 1.41e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi2700g00003 Myb_DNA-binding 3.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2700g00003 - - mtr:25493035 555.829