Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi26g00007 ATGATCCTGATTGGGGGTACCTGCAATGACACTCTGACACTCAAGTCAGTACCAAAGTCAGACTTATGTGGTATTTTTGCTGAATTAGATTATCATACCTGGATAAGGTTTTCTGGTCATGGGAGAACTTATATAGAGCAACTAATTAACTGTGTTTCTGAATTGCGCTTTCAAATGGAAGAATCATTGGAGAACTACTGGATTTCTCATTTGGAAATGGAGGAGGATAATTTGATCAATCAAAACTATAGAATAAGCCACTATCCCTATCTTTCTTCCACCACAGAAATTGAATCTGCCACTGCTAGTGCCCTTGTTGAGGCTGCAACCACCAATTTTCAAAGTTCTATTCCATTTTCCACTGTCCAAAACACCCTTTCAAATGCCACTTTTGACACTTTACCAAATAATGAAGAAAATTCTCTATCAACCCACATTTTGCCTTTGATGAACACAAGTGTAGAACCACCTATGATAAGCAATAACAGAGGTTACATGAAACATGGCTCTGCTTTGGGGTCCTTCAAAAGGACACAAGTGAACCATAGCTTGAAGGCAAGGACTTCAGAAGGAAATACAAAGAAGGTTAGAAGCTCTTCTGAGACAGCAAATCACACTGTGGCTGAGAGAAAAAGAAGACAGAAACTCACTGAGAACTTCATAGCACTTTCAGCCATCATTCCTGGGTTGAAGAAGATAGACAAGTCTTATATACTTCAAGAAGCAATCAATTATATGAAGCAACTTCAAGAACGGGTAATAGAACTAGAAAATCAGAAGCAAAAGAAATTGCAGCTCTCTATAAATGAAGACTCGACCACAAGTGAAACAAACTTGGCTGGTTATAGATTCACTAAAGCACTCCCTGAAGTTAAAGCAAGAGTTTCAGAGAAGAATGTGCTCATTTCAATCCATTGTGAGAAGCAAAATGACATTGTGTACAAAATACTGAATTTGCTTACAAATCTCCCTCTCTCTATAACCAGTAGCAGCTTATTGCAATTTGGAGCTTACACCCTTCAAATCACAATCATTGCTCAGATGGAAGATGAATATAACATAAACATTGATGATATGGTGAAAAATCTGAGGAAGGAATTAGTGAAATCACATAATGTCCAACAATGA 1128 0.3768 MILIGGTCNDTLTLKSVPKSDLCGIFAELDYHTWIRFSGHGRTYIEQLINCVSELRFQMEESLENYWISHLEMEEDNLINQNYRISHYPYLSSTTEIESATASALVEAATTNFQSSIPFSTVQNTLSNATFDTLPNNEENSLSTHILPLMNTSVEPPMISNNRGYMKHGSALGSFKRTQVNHSLKARTSEGNTKKVRSSSETANHTVAERKRRQKLTENFIALSAIIPGLKKIDKSYILQEAINYMKQLQERVIELENQKQKKLQLSINEDSTTSETNLAGYRFTKALPEVKARVSEKNVLISIHCEKQNDIVYKILNLLTNLPLSITSSSLLQFGAYTLQITIIAQMEDEYNINIDDMVKNLRKELVKSHNVQQ 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi26g00007 375 SMART finulus 206 255 IPR011598 GO:0046983
Gabi26g00007 375 Pfam Helix-loop-helix DNA-binding domain 203 250 IPR011598 GO:0046983
Gabi26g00007 375 Coils Coil 239 266 - -
Gabi26g00007 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 261 IPR036638 GO:0046983
Gabi26g00007 375 Gene3D - 191 265 IPR036638 GO:0046983
Gabi26g00007 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
Gabi26g00007 375 MobiDBLite consensus disorder prediction 185 210 - -
Gabi26g00007 375 PANTHER BHLH TRANSCRIPTION FACTOR 69 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi26g00007 Gabi-Chr26 121636 127788 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi26g00007 197 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.541 4.06e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi26g00007 HLH 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi26g00007 - - vvo:131617999 248.825