Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi26g00005 ATGGTAGTGATTGTGGCGATAGTAGTCGTGGTTGGTGACGGTGATGACGGTGCTGGTGGGGATGGCGGTGGTGACGGTGATGGTTCTTACAGGTGGCATAGTGGTAGTGATGGTGGTGATAGTGGTGGTGTCATCATGGTGGTCGTGGTCGTGGTGGTGATGACGACGGTGATGGAAATGGGTGACAACAATTCCTTTGCTCAATCTCACATGAACTCTTCTGATGAAGATAAGTTTCTCACAGAGATTGTACATCAACAACAACCATGTTTCTCCTTTGAGAGTGTTTACCACTCTTCCACCATGCAACATAACACTGCTAATTTCACCACAAGCACCATCGAAAGCACATTATCCTGTGAAGAATATGCAAGGTTTGATAAGAGACATAACAACATGCTCAAGAGTAATAGCAGCTCCAACTCCATAAACATCTCTCAAGATCATGTTGCTGCTTCACACAAACCTTCAGCAGCATCATCATCATCTCCAAACACCTTCATTTTCTCCTTTGAAAACTCAACTGTGGAACCAGCACTGCATAGACCTTCCCCGAAAGATTTTGGTGGTGATGGTACATGTTCTTCCATTTTGTGCTCAAAAAGAACTATGAGTAACCATATCATTGAACCAAAGGCAAAGCAAGGAACCAAGAAGTTTAAAAGCTCATCTGAGACACAAGATCATATAATGGCTGAGAGAAAAAGGAGACGGGAACTTACTGAGAAGTTCATAGCACTTTCTGCCACCATTCCTGGATTGAAGAAGACAGACAAGGCCTATATACTTCGAGAAGCTATGAATTATATGAAACACCTTCAGGAGCGAGTAAAAGAGCTAGAGAATCAGAACAAAAGGACAACAGCTGAAGATTCAGTAATATTCATTGAGAAATCCCATGCATTTGCAAAAGAGGAAAACAAGTCATGTGAAACAAAATCACTGCTTCAGGTTGAAGCAAGAGTCTTAGAGAAGGAAGTTCTCATTGGAATTCACTGTGAGAAACAAAAGGACATTGTGCTTAAAATAATGGCCTTGCTTCAAAATCTTCATCTATCTCTTGCTAGTAGTAGTGTATTGCCATTTGGGACTTCCACTCTTAAAGTCACCATTATTGCTCAGATGGGGGATAAGTTCAGCATGAACGTGAATGATCTAGTTAAAAACCTGTGGCAAGATCTCTTGAAGTCACATGAAATTCAAAATTAA 1209 0.4127 MVVIVAIVVVVGDGDDGAGGDGGGDGDGSYRWHSGSDGGDSGGVIMVVVVVVVMTTVMEMGDNNSFAQSHMNSSDEDKFLTEIVHQQQPCFSFESVYHSSTMQHNTANFTTSTIESTLSCEEYARFDKRHNNMLKSNSSSNSINISQDHVAASHKPSAASSSSPNTFIFSFENSTVEPALHRPSPKDFGGDGTCSSILCSKRTMSNHIIEPKAKQGTKKFKSSSETQDHIMAERKRRRELTEKFIALSATIPGLKKTDKAYILREAMNYMKHLQERVKELENQNKRTTAEDSVIFIEKSHAFAKEENKSCETKSLLQVEARVLEKEVLIGIHCEKQKDIVLKIMALLQNLHLSLASSSVLPFGTSTLKVTIIAQMGDKFSMNVNDLVKNLWQDLLKSHEIQN 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi26g00005 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Gabi26g00005 402 SMART finulus 230 279 IPR011598 GO:0046983
Gabi26g00005 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 290 IPR036638 GO:0046983
Gabi26g00005 402 Coils Coil 263 290 - -
Gabi26g00005 402 PANTHER BHLH TRANSCRIPTION FACTOR 90 396 - -
Gabi26g00005 402 Gene3D - 216 290 IPR036638 GO:0046983
Gabi26g00005 402 MobiDBLite consensus disorder prediction 16 36 - -
Gabi26g00005 402 Pfam Helix-loop-helix DNA-binding domain 228 274 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi26g00005 Gabi-Chr26 76111 89654 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi26g00005 214 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.503 3.69e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi26g00005 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi26g00005 - - gmx:100786209 377.096