Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2699g00024 ATGGACATAACGCCAACAACAACAATCAACAACAATCCTACGAGTGCAACAAAATCGCCAGAACATGACACTGAAACACCGACCAGGATCAACACCACCAAGGCCTTGTCTTTCTCCAACGGCGTCCTCAAGCGTCACCACCACTCTCACCACCACCACCATCTCTACCCTCTGGCCACCAACCACCCCGTGGCGGTGACCTACAAAGAATGCCTGAAAAACCACGCAGCCGGCTTGGGAGGCCATTCCTTGGACGGTTGCGGCGAGTTCATGCCCTCCCCCAACGCCACCGCCGCCGACCCCTGTTCCTTAAAATGCGCCGCCTGCGGCTGCCACCGGAATTTCCACCGCCGCGAGCCGGAGGATTCCCCCATCTCAACCACCACCCATGTCATAGAGTACCAGCCTCACCACCGCCATCACCCTCCGCCGCCGCCGCCGTTTCAGGTCTCCAACCGAAGCCCCAATTCGGCCTCTCCGCCGCCGATCTCCTCCTCGTACTACCCCTCTGCACCCCACATTCTCCTCGCGCTGTCCGCCGGCCTGGCGGCGCCCCCGGAGAGCACTGCTGCCCCAGCCAACAACGCCGGCGCCTTGGCCTCCCCGGTGTCCATCAGCCGGAAGCGGTTCAGGTCCAGGTTCAGCCAGGAGCAGAAGGAGAAGATGCAGAGGTTCGCGGAGAGGGTTGGGTGGAAGATGCAGAAGAGTGACGAGAATTTGGTTAGGGAGTTTTGCAGCGAGATTGGTGTTGATAGAGGGGTGCTGAAAGTTTGGATGCATAACAACAAGAACACTTATGCTAAGAAAGATAATGCCAATGATGGTAGCAAGAGCATTTTGCAGGAAGACCCCAACAACAACAACGACAACATCATAGACAATAACAACAATAACGCTGAAATAAATGGTAACGCTAGCGCTGAGGATCCGAGTCATCACGACCAGAATGATGATGGGGCTAACGTTGGTGCTAATGGGTCTTCTTCGTCTTCTTGA 996 0.5633 MDITPTTTINNNPTSATKSPEHDTETPTRINTTKALSFSNGVLKRHHHSHHHHHLYPLATNHPVAVTYKECLKNHAAGLGGHSLDGCGEFMPSPNATAADPCSLKCAACGCHRNFHRREPEDSPISTTTHVIEYQPHHRHHPPPPPPFQVSNRSPNSASPPPISSSYYPSAPHILLALSAGLAAPPESTAAPANNAGALASPVSISRKRFRSRFSQEQKEKMQRFAERVGWKMQKSDENLVREFCSEIGVDRGVLKVWMHNNKNTYAKKDNANDGSKSILQEDPNNNNDNIIDNNNNNAEINGNASAEDPSHHDQNDDGANVGANGSSSSS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2699g00024 331 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 119 IPR006456 -
Gabi2699g00024 331 SUPERFAMILY Homeodomain-like 200 268 IPR009057 -
Gabi2699g00024 331 MobiDBLite consensus disorder prediction 135 164 - -
Gabi2699g00024 331 MobiDBLite consensus disorder prediction 267 331 - -
Gabi2699g00024 331 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 265 - -
Gabi2699g00024 331 MobiDBLite consensus disorder prediction 267 309 - -
Gabi2699g00024 331 Gene3D - 194 269 - -
Gabi2699g00024 331 NCBIfam homeobox domain, ZF-HD class 207 264 IPR006455 -
Gabi2699g00024 331 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2699g00024 331 FunFam Zinc-finger homeodomain protein 2 194 268 - -
Gabi2699g00024 331 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 67 119 IPR006456 -
Gabi2699g00024 331 MobiDBLite consensus disorder prediction 1 28 - -
Gabi2699g00024 331 Pfam ZF-HD protein dimerisation region 66 120 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2699g00024 Gabi-Chr2699 338454 339960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2699g00024 1 263 ZF-HD Transcription Factor Family AT5G15210 51.515 4.73e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi2699g00024 ZF-HD_dimer 7.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2699g00024 - - qsa:O6P43_009085 355.525