Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2699g00020 ATGTCTAGCCGAAGGTCCAGGCAGCAATCAGGGTCTACAAGGATCTCTGATGACCAAATCATCGAACTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGCAATAGGCGCTCTGATAAGGTATCAGCATCCAAGGTCCTACAAGAAACCTGCAACTACATCAGAGGCTTACACAGAGAGGTTGATGACTTAAGCGAGCGACTGGCTCAGTTGTTAGCCACAATTGATACTGAGAGTGCTGAGGCTGCTATCATTAGGAGTCTACTTAACCAATAA 279 0.4588 MSSRRSRQQSGSTRISDDQIIELVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIRGLHREVDDLSERLAQLLATIDTESAEAAIIRSLLNQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2699g00020 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Gabi2699g00020 92 FunFam Transcription factor ILI6 5 87 - -
Gabi2699g00020 92 Pfam Helix-loop-helix DNA-binding domain 22 58 IPR011598 GO:0046983
Gabi2699g00020 92 Gene3D - 3 88 IPR036638 GO:0046983
Gabi2699g00020 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Gabi2699g00020 92 Coils Coil 55 82 - -
Gabi2699g00020 92 CDD bHLH_AtPRE_like 9 75 - -
Gabi2699g00020 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 77 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2699g00020 Gabi-Chr2699 252915 253965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2699g00020 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 72.500 1.66e-35 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2699g00020 HLH 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2699g00020 - - gmx:100784537 154.451