Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2699g00016 ATGGCCTTTCCACCTTCTCACAGTTTCATGTTTAACACTCATAATGAAGACTATGACCATCTCCCTTCAACCTCACTCAACGCCTTCTCCTCTTTGCCAACACAACACTTCCAAGGGGGTGCAGCTTTCATGTTGAAGAGATCCATGTCGTTTTCAGGCACTGAGAACAAGTGTGATGAAGTGCATGGAGATGATGAGTTGTCTGATGATGGGTTCCAGATTGGGGAGAAGAAGAAGAGGTTGAATTTGGAACAGGTTAAGGCACTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCTGAAAGGAAAGTGCAACTCGCTAAGGCATTGGGGTTGCAGCCAAGACAGATCGCTATATGGTTTCAGAATAGAAGGGCTAGATGGAAAACCAAGCAATTGCAGAAGGAATATGAAATCCTCAAGAAGCGGTTTGAAGCAGTCAAGGCTGATAATGATGCCCTTAAGTCTCAGAACCAGAAACTACACCAAGAGTTACAAGCTCTAAAAAGTAGGGAATGTTGTGAAGCTGGAATAATCAGCCTTAAGAAAGAAAATGAGGGTTCTTGGAGCAATGGAAGTGAAAACAGTTCAGACATTAATTTAGATCTCTCAAGAACACCAGTTTTGATTAGTCCTGTATCTTCTCAGAATGGTAAAAGCCTTCTATCTACTTCCTTAAAGCCCACCGGCATAACTCAGCTCCTCCAATACTCATCAAGACCAAACCTTCAAGATGAAGGCTTCTGCAACATGTTTCACAACATTGATGAGCAACAGAACTTTTGGCCCTGGCCTGAACAGCACCATTTCCATTGA 819 0.431 MAFPPSHSFMFNTHNEDYDHLPSTSLNAFSSLPTQHFQGGAAFMLKRSMSFSGTENKCDEVHGDDELSDDGFQIGEKKKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLQKEYEILKKRFEAVKADNDALKSQNQKLHQELQALKSRECCEAGIISLKKENEGSWSNGSENSSDINLDLSRTPVLISPVSSQNGKSLLSTSLKPTGITQLLQYSSRPNLQDEGFCNMFHNIDEQQNFWPWPEQHHFH 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2699g00016 272 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Gabi2699g00016 272 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Gabi2699g00016 272 Pfam Homeobox associated leucine zipper 132 172 IPR003106 GO:0006355|GO:0043565
Gabi2699g00016 272 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
Gabi2699g00016 272 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Gabi2699g00016 272 Coils Coil 124 172 - -
Gabi2699g00016 272 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 47 264 IPR045224 GO:0003700
Gabi2699g00016 272 Gene3D - 72 140 - -
Gabi2699g00016 272 CDD homeodomain 77 133 IPR001356 GO:0003677
Gabi2699g00016 272 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Gabi2699g00016 272 SUPERFAMILY Homeodomain-like 70 134 IPR009057 -
Gabi2699g00016 272 FunFam Homeobox-leucine zipper protein ATHB-13 69 136 - -
Gabi2699g00016 272 SMART HOX_1 75 136 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2699g00016 Gabi-Chr2699 181931 183830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2699g00016 1 267 Homeobox Transcription Factor Family AT3G01220 49.091 5.70e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi2699g00016 Homeodomain 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2699g00016 K09338 - gmx:100790803 420.239