Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2695g00015 ATGTTAGACAACAGTGCCTCTTGTGATGCACCACCATCTTCTTCTGATTCCCCCTTTGCATTATCAGAAAATGAAAATGGAGCAGCTAACAAAAGAAAAAGAAGACCAGCAGGCACACCTGATCCAGGTGCTGAGGTTGTGTCTCTCTCACCCAAGACCTTACTGGAATCTGACAGGTATGTGTGTGAGATCTGCAACCAAGGTTTTCAGAGAGACCAGAACCTTCAAATGCATAGGAGAAGGCATAAGGTACCATGGAAATTGCTGAAAAGGGAAACACAAGGGCAGAAGAGGAGGGTGTTTGTTTGCCCAGAGTCAAGCTGTTTGCACCATGATCCATGTCATGCCCTTGGTGACCTTGTTGGAATCAAGAAGCACTTCAGAAGGAAGCATAGCAATCATAAGCAGTGGGTTTGTGACAAGTGCTCAAAAGGGTATGCAGTTCAATCTGATTACAAAGCACACATCAAAACCTGTGGCACCAGAGGCCATTCGTGTGACTGTGGCCGTGTCTTTTCCAGGTTTCTGGTTGAGAGTTTCATAGAACATCAAGATGCCTGCACTGTCCGGCAATACAGGCCAGAGTTACAAGCACTTCAACCTGCTTGCTCTTCTCGAACAGCTTCAAGCACAAGTCCATCTAGTGAGGCAAATTTTAGCATAACCCCATTGCAAGGACTACCACTGCTAAAACCAGTTGATCAGATACACAATAAGCTCAGCACCACGAATAACCAGCATAACTTAGAACTTCAGCTCTTACCTTCTTCAATAAATTCTCAAGAAAAAAGAAACTCAAAGGAAAACTTTGAAACCCACTTGAAACTTTCAATAGGTTCATGTAGTAATGACAAAGCAAGTGAATCAGAGAGACCAGGGTCAGAAACAAATAGGAGCCCACCAGCTGCAGAAATGCATGTGAATGATTCCACATTGGAAGTAGCGAGTTTGAAAGAGTTTGCTGGTGAAGAACTCAAGTTGGCCATGGCAGAAAATGCTTATGCAGAAGAGGCTAGACGAGAAGCTAAACGTCAAATTGAGATAGCTGAACTTGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCACAAAGTGAGCTTGGAAAAGCTGAAGCTTTGAGAAAGCAAGCCATTAAGAAGATAAGCTCCACCGTTATGGAAATAACGTGCCAATCTTGCAAGCAACAGTTCCAATCTTCAACTGCTGGGGTTCCATCAGAAGAGACATCCATTGTAATGAGTTATATGTCCTCAGCCACCACAGAAGGGGAAGCAGAATGA 1281 0.4372 MLDNSASCDAPPSSSDSPFALSENENGAANKRKRRPAGTPDPGAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKRRVFVCPESSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRFLVESFIEHQDACTVRQYRPELQALQPACSSRTASSTSPSSEANFSITPLQGLPLLKPVDQIHNKLSTTNNQHNLELQLLPSSINSQEKRNSKENFETHLKLSIGSCSNDKASESERPGSETNRSPPAAEMHVNDSTLEVASLKEFAGEELKLAMAENAYAEEARREAKRQIEIAELEFENAKRIRKQAQSELGKAEALRKQAIKKISSTVMEITCQSCKQQFQSSTAGVPSEETSIVMSYMSSATTEGEAE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2695g00015 426 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Gabi2695g00015 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Gabi2695g00015 426 Coils Coil 325 380 - -
Gabi2695g00015 426 MobiDBLite consensus disorder prediction 1 49 - -
Gabi2695g00015 426 Gene3D Classic Zinc Finger 38 107 - -
Gabi2695g00015 426 SUPERFAMILY beta-beta-alpha zinc fingers 59 157 IPR036236 -
Gabi2695g00015 426 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 381 IPR031140 -
Gabi2695g00015 426 MobiDBLite consensus disorder prediction 277 304 - -
Gabi2695g00015 426 SMART c2h2final6 137 164 IPR013087 -
Gabi2695g00015 426 SMART c2h2final6 101 131 IPR013087 -
Gabi2695g00015 426 SMART c2h2final6 60 82 IPR013087 -
Gabi2695g00015 426 MobiDBLite consensus disorder prediction 277 307 - -
Gabi2695g00015 426 MobiDBLite consensus disorder prediction 1 24 - -
Gabi2695g00015 426 FunFam protein indeterminate-domain 12-like 39 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2695g00015 Gabi-Chr2695 159193 161669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2695g00015 26 426 C2H2 Transcription Factor Family AT2G01940 56.872 3.33e-155 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2695g00015 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2695g00015 K25871 - gmx:100791007 623.624