Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2695g00014 ATGTTAGACAACAGTGCCTCTTGTGATGCACCACCATCTTCTTCTGATTCCCCCTTTGCATTATCAGAAAATGAAAATGGAGCAGCTAACAAAAGAAAAAGAAGACCAGCAGGCACACCTGATCCAGGTGCTGAGGTTGTGTCTCTCTCACCCAAGACCTTACTGGAATCTGACAGGTATGTGTGTGAGATCTGCAACCAAGGTTTTCAGAGAGACCAGAACCTTCAAATGCATAGGAGAAGGCATAAGGTACCATGGAAATTGCTGAAAAGGGAAACACAAGGGCAGAAGAGGAGGGTGTTTGTTTGCCCAGAGTCAAGCTGTTTGCACCATGATCCATGTCATGCCCTTGGTGACCTTGTTGGAATCAAGAAGCACTTCAGAAGGAAGCATAGCAATCATAAGCAGTGGGTTTGTGACAAGTGCTCAAAAGGGTATGCAGTTCAATCTGATTACAAAGCACACATCAAAACCTGTGGCACCAGAGGCCATTCGTGTGACTGTGGCCGTGTCTTTTCCAGGGTTGAGAGTTTCATAGAACATCAAGATGCCTGCACTGTCCGGCAATACAGGCCAGAGTTACAAGCACTTCAACCTGCTTGCTCTTCTCGAACAGCTTCAAGCACAAGTCCATCTAGTGAGGCAAATTTTAGCATAACCCCATTGCAAGGACTACCACTGCTAAAACCAGTTGATCAGATACACAATAAGCTCAGCACCACGAATAACCAGCATAACTTAGAACTTCAGCTCTTACCTTCTTCAATAAATTCTCAAGAAAAAAGAAACTCAAAGGAAAACTTTGAAACCCACTTGAAACTTTCAATAGGTTCATGTAGTAATGACAAAGCAAGTGAATCAGAGAGACCAGGGTCAGAAACAAATAGGAGCCCACCAGCTGCAGAAATGCATGTGAATGATTCCACATTGGAAGTAGCGAGTTTGAAAGAGTTTGCTGGTGAAGAACTCAAGTTGGCCATGGCAGAAAATGCTTATGCAGAAGAGGCTAGACGAGAAGCTAAACGTCAAATTGAGATAGCTGAACTTGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCACAAAGTGAGCTTGGAAAAGCTGAAGCTTTGAGAAAGCAAGCCATTAAGAAGATAAGCTCCACCGTTATGGAAATAACGTGCCAATCTTGCAAGCAACAGTTCCAATCTTCAACTGCTGGGGTTCCATCAGAAGAGACATCCATTGTAATGAGTTATATGTCCTCAGCCACCACAGAAGGGGAAGCAGAATGA 1275 0.4376 MLDNSASCDAPPSSSDSPFALSENENGAANKRKRRPAGTPDPGAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKRRVFVCPESSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQYRPELQALQPACSSRTASSTSPSSEANFSITPLQGLPLLKPVDQIHNKLSTTNNQHNLELQLLPSSINSQEKRNSKENFETHLKLSIGSCSNDKASESERPGSETNRSPPAAEMHVNDSTLEVASLKEFAGEELKLAMAENAYAEEARREAKRQIEIAELEFENAKRIRKQAQSELGKAEALRKQAIKKISSTVMEITCQSCKQQFQSSTAGVPSEETSIVMSYMSSATTEGEAE 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2695g00014 424 Coils Coil 323 378 - -
Gabi2695g00014 424 MobiDBLite consensus disorder prediction 1 47 - -
Gabi2695g00014 424 MobiDBLite consensus disorder prediction 274 305 - -
Gabi2695g00014 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 379 IPR031140 -
Gabi2695g00014 424 SMART c2h2final6 137 164 IPR013087 -
Gabi2695g00014 424 SMART c2h2final6 101 131 IPR013087 -
Gabi2695g00014 424 SMART c2h2final6 60 82 IPR013087 -
Gabi2695g00014 424 MobiDBLite consensus disorder prediction 1 24 - -
Gabi2695g00014 424 FunFam protein indeterminate-domain 12-like 39 107 - -
Gabi2695g00014 424 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Gabi2695g00014 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Gabi2695g00014 424 SUPERFAMILY beta-beta-alpha zinc fingers 57 83 IPR036236 -
Gabi2695g00014 424 Gene3D Classic Zinc Finger 38 107 - -
Gabi2695g00014 424 MobiDBLite consensus disorder prediction 274 302 - -
Gabi2695g00014 424 Gene3D Classic Zinc Finger 122 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2695g00014 Gabi-Chr2695 159193 161669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2695g00014 26 424 C2H2 Transcription Factor Family AT2G01940 56.872 1.91e-153 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2695g00014 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2695g00014 K25871 - gmx:100791007 628.632