Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2695g00013 ATGGAGAACAACCCAGTTCAGCTTTTTCCTCATCTCACTGTAACACTCCTCCTTACTATGACTGTTTTGTTTCCTTTGACTAAGGAAGCTGCTGCAGTTTCTTCCATCAAGACTGATGCAGAGGGTCTTCTAATGTTCAAAAAGATGATTCAGAAGGATCCAGATAGAGTTTTGTCAGGGTGGCAGATAAATAGAAACCCATGCAGTTGGCATGGAGTGACTTGCACCCTAGGAAGAGTTACTCAGCTTGATCTTAGTGGGAATAGTAACCTTGCTGGGACTATTTCTTTTGATCCTCTGTCTTCTTTAGATATGTTATCCATTCTGAAATTGTCTTTGAATGTATTTTCTGTGAATTCTACTTCTTTGCTTCAGCTACCATATAGTTTGACACAGCTTGATCTATCCTTTGGTGGAGTTACAGGTCCTGTCCCTGAAAAACTTTTCTCCAAGTGTCCAAATCTTGTTGTTGTGAATCTTTCTTACAACAACTTGACAGGCCCTATTCCTGAATATTTCCTGCAAAATTCTGATAAACTGCAGGTCCTTGACCTCTCTTCCAACAATTTGACAGGGTCAATCTCTGGTCTGAAAATTGAGTGCAAGTCCTTGTTGCAACTTGATCTATCTGGAAACCATTTATCAGACTCATTTCCAATCTCTTTGTCAAACTGCACCAGCCTTCAAAATTTGGATTTAGCCAACAATTTCATTTCTGGTGAAATCCCAAAAGCTTTAGGTCAGCTGAACAAACTACAGACTTTGGATCTTTCCCACAATCAACTTACTGGCTGGATCCCTTCTGAATTTGGAAATGCTTGTGCATCTCTTTTAGAACTTAAACTTTCTTTCAACAACATCTCAGGCTCAATCCCCACTAGTTTCTCTTCTTGCACTTGGCTTCAACTTCTTGACATATCAAACAACAATATGTCAGGTCAATTACCAGATTCAATCTTTCAGAACTTTGGATCATTGCAGGAACTGCGGCTGGGAAATAATGCTATCTCAGGGCAATTTCCATCTTCAATATCTTCCTGCAAGAAATTGAGGATTGTGGATTTCAGCTCAAATAAAGTTTGTGGATCTATCCCCAGAGATATATGTCCAGGTGCAGCCTCACTTGAGGAACTGAGAATGCCAGATAATCTCATCACAGGAGAAATCCCAGCTGAACTGTCAAAGTGCTCACAACTGAAGACACTTGATTTTAGTCTGAACTATCTCAATGGTTCAATCCCTGATGAGCTTGGACAACTTGAAAACCTTGAGCAGCTAATAGCATGGTTCAATGACTTGGAAGGAAAGATTCCACCAAAGTTGGGCCAGTGCAGGAATCTTAAGGATCTCATACTGAATAACAATCGCCTCACTGGTGGAATTCCCATTGAGTTGTTCAATTGCAGCAATCTTGAATGGATATCACTGACAAGCAATGGACTCAGTGGTGAAATACCACGTGAGTTTGGCCTCTTGACAAGGTTAGCAGTTCTGCAGCTTGGAAATAACAGCTTCACAGGAGAGATACCAGAAGAGCTAGCACATTGCAGCAGTTTGGTGTGGTTGGACTTGAACAGCAACAAGCTCACTGGAGAGATCCCTCCTAGACTTGGCAGGCAGCAAGGAGCAAAATCATTGTTTGGGATCCTCTCAGGAAACACTTTGGTGTTTGTAAGAAATGTTGGAAACTCATGTAAAGGAGTTGGAGGTTTGTTAGAATTCTCTGGAATTAGACCTGAAAGGCTCTTGCAGGTTCCAACATTGAGGACTTGTGATTTCACAAGACTCTATTCTGGTGCTGTCCTCAGCCTGTTTACCAAGTACCAGACTTTGGAGTATCTTGATCTCTCCTACAATGAGCTTCGTGGAAAAATCCCAGAAGAATTTGGAGATATGGTGGCTCTACAGGTTCTTGAATTATCTCACAATCAGCTATCTGGAGAAATCCCTTCATCACTTGGCAAGCTCAAAAATTTGGGTGTGTTTGATGCATCACACAATAGACTTCAGGGTCATATCCCTGACTCTTTCTCAAACCTCTCATTCTTAGTGCAAATTGATCTGTCTAACAATGAGTTAACTGGGCAAATCCCATCCAGGGGACAACTAAGTACACTCCCAGCTACACAGTATTCAAACAACCCTGGTCTTTGTGGTGTTCCATTGCCTGATTGCAAGAATGACAACATCCAATCCATAACAAATCCAAGTGATGATGTTGGCAAAGGAGGCCATAGATCAGCAACTGCATCATGGGCAAACAGCATTGTCATGGGAATCCTCATTTCTGTTGCTTCTATATGTATTTTAATAGTGTGGGCAATTGCAATGCGCGTAAGGAGGAGGGAGGCTGAGGAAGTCAAGATGCTTAATAGCTTGCAAGCATCCCATGCTGCTACAACATGGAAAATTGACAAAGAGAAAGAGCCCTTAAGCATTAATGTTGCAACATTTCAGAGGCAGCTTAGGAAGCTCAAATTCTCACAGTTGATTGAAGCAACCAATGGCTTCTCAGCAGAAAGTCTTATAGGGTGTGGTGGTTTTGGGGAAGTGTTCAAGGCCACACTCAAGGACGGGTCAAGTGTTGCAATAAAGAAGCTCATTCGACTGAGTTGTCAGGGTGATCGAGAATTCATGGCTGAGATGGAAACCTTAGGGAAGATCAAGCATAGAAACCTTGTCCCTTTATTGGGATACTGCAAAGTAGGAGAAGAGAGGCTACTTGTTTATGAATACATGGAGTATGGAAGCCTAGAAGAGATGCTTCATGGGAGAGTAAAGACACGTGATCGACGAATTTTAACATGGCAAGAAAGGAAGAAGATTGCAAGAGGTGCTGCCAAAGGACTTTGTTTCCTGCACCACAATTGCATCCCACACATCATCCATAGAGACATGAAATCAAGCAATGTGCTACTTGACCATGAAATGGAGTCCAGGGTGTCAGATTTTGGAATGGCAAGACTAATAAGTGCCCTTGATACACATCTTAGTGTAAGCACACTAGCAGGAACACCTGGATATGTTCCACCAGAGTACTACCAAAGTTTCAGGTGCACTGCCAAGGGAGATGTTTACTCATTTGGGGTTGTAATGTTGGAACTTCTTAGTGGCAAACGCCCTACTGATAAGGAGGACTTTGGTGACACTAACTTGGTGGGGTGGGCCAAAATGAAGGTACGTGAAGGGAAACAGATGGAAGTAATTGACTCTGACTTGCTTTTGGCAACTCAAGGAACAGATGATGAATCAGAAGCCAAAGAAGTGAAAGAGATGGTCAGATATTTGGAGATTACTTTGCAGTGTGTTGATGACTTGCCTTCCAGAAGGCCAAACATGTTGCAGGTAGTGGCCATGCTGAGAGAGCTTATGCCTGGATCAACTGAAGGAAGCAGCAACAGTGCTTGA 3408 0.4243 MENNPVQLFPHLTVTLLLTMTVLFPLTKEAAAVSSIKTDAEGLLMFKKMIQKDPDRVLSGWQINRNPCSWHGVTCTLGRVTQLDLSGNSNLAGTISFDPLSSLDMLSILKLSLNVFSVNSTSLLQLPYSLTQLDLSFGGVTGPVPEKLFSKCPNLVVVNLSYNNLTGPIPEYFLQNSDKLQVLDLSSNNLTGSISGLKIECKSLLQLDLSGNHLSDSFPISLSNCTSLQNLDLANNFISGEIPKALGQLNKLQTLDLSHNQLTGWIPSEFGNACASLLELKLSFNNISGSIPTSFSSCTWLQLLDISNNNMSGQLPDSIFQNFGSLQELRLGNNAISGQFPSSISSCKKLRIVDFSSNKVCGSIPRDICPGAASLEELRMPDNLITGEIPAELSKCSQLKTLDFSLNYLNGSIPDELGQLENLEQLIAWFNDLEGKIPPKLGQCRNLKDLILNNNRLTGGIPIELFNCSNLEWISLTSNGLSGEIPREFGLLTRLAVLQLGNNSFTGEIPEELAHCSSLVWLDLNSNKLTGEIPPRLGRQQGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLLQVPTLRTCDFTRLYSGAVLSLFTKYQTLEYLDLSYNELRGKIPEEFGDMVALQVLELSHNQLSGEIPSSLGKLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPATQYSNNPGLCGVPLPDCKNDNIQSITNPSDDVGKGGHRSATASWANSIVMGILISVASICILIVWAIAMRVRRREAEEVKMLNSLQASHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRVKTRDRRILTWQERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKMKVREGKQMEVIDSDLLLATQGTDDESEAKEVKEMVRYLEITLQCVDDLPSRRPNMLQVVAMLRELMPGSTEGSSNSA 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2695g00013 1135 Gene3D - 550 606 - -
Gabi2695g00013 1135 Pfam Leucine rich repeat 604 645 IPR001611 GO:0005515
Gabi2695g00013 1135 Pfam Leucine rich repeat 204 262 IPR001611 GO:0005515
Gabi2695g00013 1135 Pfam Leucine rich repeat 301 359 IPR001611 GO:0005515
Gabi2695g00013 1135 Pfam Leucine rich repeat 129 190 IPR001611 GO:0005515
Gabi2695g00013 1135 Pfam Leucine rich repeat 469 529 IPR001611 GO:0005515
Gabi2695g00013 1135 ProSitePatterns Protein kinases ATP-binding region signature. 843 866 IPR017441 GO:0005524
Gabi2695g00013 1135 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 371 557 - -
Gabi2695g00013 1135 Gene3D Phosphorylase Kinase; domain 1 796 912 - -
Gabi2695g00013 1135 Pfam Brassinosteroid receptor island domain 547 605 IPR045381 -
Gabi2695g00013 1135 FunFam serine/threonine-protein kinase BRI1-like 2 798 912 - -
Gabi2695g00013 1135 SMART serkin_6 837 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2695g00013 1135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 961 973 IPR008271 GO:0004672|GO:0006468
Gabi2695g00013 1135 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 198 275 - -
Gabi2695g00013 1135 SUPERFAMILY L domain-like 574 723 - -
Gabi2695g00013 1135 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 276 364 - -
Gabi2695g00013 1135 ProSiteProfiles Protein kinase domain profile. 837 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2695g00013 1135 PRINTS Leucine-rich repeat signature 180 193 - -
Gabi2695g00013 1135 PRINTS Leucine-rich repeat signature 249 262 - -
Gabi2695g00013 1135 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 274 1122 - -
Gabi2695g00013 1135 SMART LRR_typ_2 517 540 IPR003591 -
Gabi2695g00013 1135 SMART LRR_typ_2 632 656 IPR003591 -
Gabi2695g00013 1135 SMART LRR_typ_2 492 516 IPR003591 -
Gabi2695g00013 1135 SMART LRR_typ_2 420 444 IPR003591 -
Gabi2695g00013 1135 SMART LRR_typ_2 249 272 IPR003591 -
Gabi2695g00013 1135 SMART LRR_typ_2 323 347 IPR003591 -
Gabi2695g00013 1135 SMART LRR_typ_2 445 468 IPR003591 -
Gabi2695g00013 1135 Gene3D Ribonuclease Inhibitor 150 725 IPR032675 -
Gabi2695g00013 1135 FunFam serine/threonine-protein kinase BRI1-like 2 38 150 - -
Gabi2695g00013 1135 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Gabi2695g00013 1135 SUPERFAMILY RNI-like 220 541 - -
Gabi2695g00013 1135 CDD STKc_IRAK 843 1123 - -
Gabi2695g00013 1135 SUPERFAMILY L domain-like 39 316 - -
Gabi2695g00013 1135 ProSiteProfiles Leucine-rich repeat profile. 179 201 IPR001611 GO:0005515
Gabi2695g00013 1135 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 572 729 - -
Gabi2695g00013 1135 Gene3D Transferase(Phosphotransferase) domain 1 913 1133 - -
Gabi2695g00013 1135 ProSiteProfiles Leucine-rich repeat profile. 251 272 IPR001611 GO:0005515
Gabi2695g00013 1135 Pfam Protein tyrosine and serine/threonine kinase 840 1119 IPR001245 GO:0004672|GO:0006468
Gabi2695g00013 1135 FunFam serine/threonine-protein kinase BRI1-like 2 913 1131 - -
Gabi2695g00013 1135 SUPERFAMILY Protein kinase-like (PK-like) 818 1120 IPR011009 -
Gabi2695g00013 1135 Gene3D Ribonuclease Inhibitor 38 149 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2695g00013 Gabi-Chr2695 148210 151668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2695g00013 43 1132 Receptor kinase-like Gene Family AT1G55610 48.940 0.0 1016
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gabi2695g00013 PK_Tyr_Ser-Thr 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2695g00013 - - gmx:100789959 2066.2