Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2693g00012 ATGTCTACTATGGTTTCTGCTCTAGCTCAAGTTATTGGGACTACCAATCGGAACCCAAACATGGCACAATCGACCTCGTTTCCTGTCTCAACTTCCGTGGTCAACACATCTCAACCTCTTCTAGATCAAGAGGTCACAAAGAAACCACACTACAGAGGAGTAAGACAGAGACCTTGGGGAAAATGGGCAGCAGAAATACGTGATCCAATAAAAGCAGCAAGAGTGTGGCTTGGAACCTTTGATACAGCTGAGGATGCAGCCATTGCATATGACAAAGCAGCACTCAAATTCAAAGGCACAAAAGCTAAGCTCAATTTCCCTGAACGAGTTCAACTCAACACTACTAGTACTCCTCAATCTCATGTTGGCTATGATCAGCTACTACAAGGTTCAGGGAACATAAACTTTTTTCCTTCTCATAACACTGCCACTAGTGCTAGTTCCACTCAACAAAGTGGATATGTTTCTTCTGTTGTTGATGTTGCTCCTCCTAGCTCTTTGTCCACCACACATGAAGAAGTACATGATCACCAAGTTTTCCCAAATCTGTTTCAATACGCACAGATTCTTTCCAGTGATGATGCAGAATTCCCTTATTACACGTCACATCTTTTCAATCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACCTTTCAGTTCTCAATTTTCTACCACTTTGTCTTCATCTTCATCACCCTCATCCTATTTCTACAACGATGGTCGGCAACAACAACAACATGATGAAGAAGGAAATCATCATTACCCAGACCAGTAG 831 0.4128 MSTMVSALAQVIGTTNRNPNMAQSTSFPVSTSVVNTSQPLLDQEVTKKPHYRGVRQRPWGKWAAEIRDPIKAARVWLGTFDTAEDAAIAYDKAALKFKGTKAKLNFPERVQLNTTSTPQSHVGYDQLLQGSGNINFFPSHNTATSASSTQQSGYVSSVVDVAPPSSLSTTHEEVHDHQVFPNLFQYAQILSSDDAEFPYYTSHLFNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPFSSQFSTTLSSSSSPSSYFYNDGRQQQQHDEEGNHHYPDQ 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2693g00012 276 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Gabi2693g00012 276 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Gabi2693g00012 276 PANTHER DNA-BINDING DOMAIN 38 239 IPR044808 GO:0003700|GO:0009873
Gabi2693g00012 276 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
Gabi2693g00012 276 MobiDBLite consensus disorder prediction 225 276 - -
Gabi2693g00012 276 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Gabi2693g00012 276 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Gabi2693g00012 276 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Gabi2693g00012 276 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Gabi2693g00012 276 Coils Coil 205 235 - -
Gabi2693g00012 276 MobiDBLite consensus disorder prediction 261 276 - -
Gabi2693g00012 276 Gene3D AP2/ERF domain 50 109 IPR036955 GO:0003700|GO:0006355
Gabi2693g00012 276 MobiDBLite consensus disorder prediction 225 260 - -
Gabi2693g00012 276 CDD AP2 49 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2693g00012 Gabi-Chr2693 152737 155757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2693g00012 4 205 AP2-EREBP Transcription Factor Family AT5G13330 45.813 1.39e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2693g00012 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2693g00012 - - gmx:100796624 270.396