Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2693g00010 ATGCAATTCGCAAAGCTCGATGATTCTCCTATGTTCCGCAAGCAGATACAATGCATGGAGGAAAGTGCTGAATCTTTGAGAGAGAGAAGTTTAAAATTTTACAAAGGATGTAGAAAATACACCGAAGGACTTGGGGAGGCATATGATGGAGATATTGCATTTGCAAGTGCCTTAGAAACTTTTGGTGGTGGGCATAATGATCCCATCAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCCTTGAGAGAAATTGGGACATACAAGGAAGTTCTTCGATCACAGGTTGAGCATATGTTAAATGACAGATTGCTTCAGTTTGTCAATATGGATTTGCAAGAGGTCAAGGAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGACTCGAGAAAAGTTTCTGTCACTGAGAAAGGGGACAAAAAGTGATGTAGCTACTGCCCTAGAAGAGGAGCTTCATAGTGCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTGTCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCGCATCTTCGTTACTTCAAACAGGGGTATGAATTGTTGCACCAAATGGAGCCATATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAATTATGAACAAGCAGCTCTCAATGAAAGAATGCAAGATTACAAACGACAGATTGATCGAGAGAGTAGGTGGGCTTCAAATGGTTCTAATGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATTCGACAAGGTTATCTCTCAAAGCGTTCCTCAAACTTAAGGGGGGACTGGAAAAGGAGGTTTTTTGTTCTTGACAGTCGGGGAATGCTGTATTACTACCGTAAACAATGCAGCAAATCATCAGGGTCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATTATCATGGTGGAGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACCTGCTTACATCAACCATCAAAGTTGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCACCAACTAAGAACTACACTTTGCAGGCAGAGAGTGCGCTAGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCCTCATTGCTGAGTTCTCAGATTCCTGAAAGGTTGTTGCCTGCAAGTCCCATGGGAAGTGGTCATCATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTGTGCTGTTGAGGATTGTACAGCTGATAGAAGTCTTGCTTCTGCGCATCCGGAACGCCCCTCAAGAAGTTTGCACCAGCCTCGATCCTGTATTAAAAGTGAGAAGCCAATTGATGTGTTGCGAAGAGTTTGTGGGAATGATAAATGTGCTGATTGTGGTGCCCCTGAACCTGATTGGGCATCACTTAATCTTGGTGTTCTTGTTTGCATTGAATGTTCTGGTGTTCATCGAAACCTTGGCGTGCACATATCAAAGGTCAGATCACTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCAGTCTGGGAGGAACTATTGCAATCGAGAAGTGCCTTCCAGGTTGATCTTACAGGGTTGAACAAGTCCGATAAACCACTGATGCTTTTTATCACCAAACCTTGTCAGTCTGATTCTCTATCTGTAAAGGAAAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTTCGCAAGCCAAAGGACAATCAATACCGTCTCTTGGTGGCACAACAGATCTGGGAGGCTGTTCGTGCTAATGACAAAAAAGCTGTATACCGCTACATTGTTAATTCTGACATTGATGTTAATATTGGTTATGAGCAAACATGCAGCAGCTCCTTAACCCTTGCCAAAGTAATGCTATTACAAGAGCAGACAAGCCATGATATCAACTCTAATTTGTCAGGGAACACATTGGACTGGTCCTCTACTAGCTCTTTAAATTTGGGGGGTACTAAAGAAGGCCAGGCTATGGACAATCTAGATGGGTGCACCCTACTTCACCTTGCTTGTGAAACTGCAGATATTGGCATGCTGGAGCTCCTACTACAGTATGGTGCTAATGTTAATGCAACTGATTTGAGAGGCCAAACACCACTACATCGCTGTATTCTCAAAGGCAGATCTACATTTGCGAGATTACTGCTTTCAAGGGGTGCCGATCCTCGAGCCGTGGATGACCAGGGAAGAACCCCTATTGAGCTTGCTGCAGAATCAAATGCTGATAACAGAGAAGTCCTTGCTCCATTGACTGATTCTAATGGATGA 2487 0.4278 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNMDLQEVKEARKRFDKASLIYDQTREKFLSLRKGTKSDVATALEEELHSARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQDYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSGHHRSTSESSSFESSDFDHCAVEDCTADRSLASAHPERPSRSLHQPRSCIKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLTGLNKSDKPLMLFITKPCQSDSLSVKEKFIHAKYAEKLFVRKPKDNQYRLLVAQQIWEAVRANDKKAVYRYIVNSDIDVNIGYEQTCSSSLTLAKVMLLQEQTSHDINSNLSGNTLDWSSTSSLNLGGTKEGQAMDNLDGCTLLHLACETADIGMLELLLQYGANVNATDLRGQTPLHRCILKGRSTFARLLLSRGADPRAVDDQGRTPIELAAESNADNREVLAPLTDSNG 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2693g00010 828 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Gabi2693g00010 828 SUPERFAMILY Ankyrin repeat 666 814 IPR036770 -
Gabi2693g00010 828 SUPERFAMILY PH domain-like 293 443 - -
Gabi2693g00010 828 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Gabi2693g00010 828 SMART arf_gap_3 500 643 IPR001164 GO:0005096
Gabi2693g00010 828 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Gabi2693g00010 828 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Gabi2693g00010 828 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Gabi2693g00010 828 ProSiteProfiles Ankyrin repeat region circular profile. 735 766 - -
Gabi2693g00010 828 MobiDBLite consensus disorder prediction 253 269 - -
Gabi2693g00010 828 ProSiteProfiles Ankyrin repeat profile. 735 767 IPR002110 GO:0005515
Gabi2693g00010 828 CDD ArfGap 503 630 - -
Gabi2693g00010 828 Gene3D Arf GTPase activating protein 483 642 IPR038508 -
Gabi2693g00010 828 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Gabi2693g00010 828 ProSiteProfiles Ankyrin repeat profile. 768 800 IPR002110 GO:0005515
Gabi2693g00010 828 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Gabi2693g00010 828 ProSiteProfiles Ankyrin repeat region circular profile. 768 800 - -
Gabi2693g00010 828 PANTHER CENTAURIN/ARF 3 825 IPR045258 GO:0005096
Gabi2693g00010 828 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Gabi2693g00010 828 CDD BAR_SFC_plant 14 215 IPR035670 -
Gabi2693g00010 828 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 644 - -
Gabi2693g00010 828 Pfam Putative GTPase activating protein for Arf 503 638 IPR001164 GO:0005096
Gabi2693g00010 828 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 643 IPR001164 GO:0005096
Gabi2693g00010 828 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Gabi2693g00010 828 MobiDBLite consensus disorder prediction 441 461 - -
Gabi2693g00010 828 MobiDBLite consensus disorder prediction 447 461 - -
Gabi2693g00010 828 Gene3D - 643 823 IPR036770 -
Gabi2693g00010 828 SMART PH_update 293 430 IPR001849 -
Gabi2693g00010 828 MobiDBLite consensus disorder prediction 249 270 - -
Gabi2693g00010 828 Coils Coil 227 247 - -
Gabi2693g00010 828 Pfam PH domain 294 427 IPR001849 -
Gabi2693g00010 828 MobiDBLite consensus disorder prediction 807 828 - -
Gabi2693g00010 828 SUPERFAMILY ArfGap/RecO-like zinc finger 500 638 IPR037278 -
Gabi2693g00010 828 SMART ANK_2a 735 764 IPR002110 GO:0005515
Gabi2693g00010 828 SMART ANK_2a 768 797 IPR002110 GO:0005515
Gabi2693g00010 828 Gene3D - 285 437 IPR011993 -
Gabi2693g00010 828 CDD PH_ACAP 295 432 - -
Gabi2693g00010 828 Pfam Ankyrin repeats (many copies) 755 809 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2693g00010 Gabi-Chr2693 102230 113718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2693g00010 512 637 C2H2 Transcription Factor Family AT4G21160 39.370 3.81e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2693g00010 K12489 - gmx:100789134 1479.15