LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2692g00033	ATGAACTATTTGTATCCAGTGAAAGAAGAAGAATACTTGGAACCATCGTCATCAACAGCAACATTTCACATAGGAGGTGATGATGAACCATCAATGGTTCCTCCTCCGCAGCCAATGGAGGGGCTTCATGAAATAGGACCACCCCCATTTCTCACAAAGACCTTCGATGTAGTGGACGATCCTATCACTGATCATGTAGTTTCATGGAGCAGAGGTGGTGCAAGCTTTGTGGTTTGGGATCCACATGCTTTCTCCAGGAACCTTCTTCCCAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTTAGGCAACTTAACACATATGGTTTTAGAAAAATTGATCCAGATAAATGGGAGTTTGCAAATGAAGGATTCCTGAGAGGGCACAAGCACCGGTTAGCAAACATAAGGAGAAGGAAGCAACCTTATCAACCTAGTCCTTCCCAACAAGCACAAGCACAAGCACAAGCACAAGGACAAGGTCTCTGTGTTGAAGTTGGACGTTTTGGGCTGGATGAAGAGATTGATCGTTTGAGGCGTGACAAGCAGGTGTTGATGATGGAGCTTGTGAAGCTTAGACAGCAGCAACAGAACACCAGATGCTACCTTGTGGAAATGGATGAAAGGTTACGAGGGACAGAAATTAAGCAGCAACAAATGATGGCTTTCTTAGCTAAAGCTATGAAAAATCCAGCCTTCATTCAGCAGCTATTCCAACTGAAAGAGAAGAGAAAGGAGCTTGAAGAAGCCATGACTAAAAAGAGGAGAAGACCAATTGAGCAAGGACCTGGAGGTGTTGGAGAATCAAGCTTGTCAGAGCTGGAAGTGCTAGCTATGGAAATGCAAGGTTTTGGTAAGGGGAAGAGAGAACTGGAGGAAGAGCCTGAGCCACTAGAACAGCAAGAACTTGATGAAGGGTTCTGGGAAGAACTGTTCAGTGAGAATTTTGAGGGTGAATTAGACATTCCAACTTCTCAAGGTGAAGGTGAAGATGAAGATGAAGATGTTAATGTGTTGGCCTATCGCTTAGGTTACTTGGGTTCAAGTCCTTTCAATATTGCTCCAGATGAGGCAGTGGAGTCATCCCAGTTGGCAAGACAGTAA	1104	0.442	MNYLYPVKEEEYLEPSSSTATFHIGGDDEPSMVPPPQPMEGLHEIGPPPFLTKTFDVVDDPITDHVVSWSRGGASFVVWDPHAFSRNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHKHRLANIRRRKQPYQPSPSQQAQAQAQAQGQGLCVEVGRFGLDEEIDRLRRDKQVLMMELVKLRQQQQNTRCYLVEMDERLRGTEIKQQQMMAFLAKAMKNPAFIQQLFQLKEKRKELEEAMTKKRRRPIEQGPGGVGESSLSELEVLAMEMQGFGKGKRELEEEPEPLEQQELDEGFWEELFSENFEGELDIPTSQGEGEDEDEDVNVLAYRLGYLGSSPFNIAPDEAVESSQLARQ	367

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2692g00033	367	ProSitePatterns	HSF-type DNA-binding domain signature.	89	113	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2692g00033	367	SMART	hsfneu3	46	139	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2692g00033	367	Pfam	HSF-type DNA-binding	50	139	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2692g00033	367	FunFam	Heat shock transcription factor 1	43	140	-	-
	Gabi2692g00033	367	SUPERFAMILY	"Winged helix" DNA-binding domain	46	139	IPR036390	-
	Gabi2692g00033	367	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	36	287	IPR027725	-
	Gabi2692g00033	367	MobiDBLite	consensus disorder prediction	348	367	-	-
	Gabi2692g00033	367	Coils	Coil	175	195	-	-
	Gabi2692g00033	367	PRINTS	Heat shock factor (HSF) domain signature	101	113	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2692g00033	367	PRINTS	Heat shock factor (HSF) domain signature	88	100	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2692g00033	367	PRINTS	Heat shock factor (HSF) domain signature	50	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gabi2692g00033	367	Coils	Coil	237	257	-	-
	Gabi2692g00033	367	Gene3D	-	43	140	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2692g00033	Gabi-Chr2692	361564	363647	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2692g00033	28	349	HSF	AT3G22830	52.406	3.64e-124	362

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Gabi2692g00033		HSF_DNA-bind	2.4e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2692g00033	K09419		-	gmx:100794264	510.76