Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2692g00032 ATGAACTATTTGTATCCAGTGAAAGAAGAAGAATACTTGGAACCATCGTCATCAACAGCAACATTTCACATAGGAGGTGATGATGAACCATCAATGGTTCCTCCTCCGCAGCCAATGGAGGGGCTTCATGAAATAGGACCACCCCCATTTCTCACAAAGACCTTCGATGTAGTGGACGATCCTATCACTGATCATGTAGTTTCATGGAGCAGAGGTGGTGCAAGCTTTGTGGTTTGGGATCCACATGCTTTCTCCAGGAACCTTCTTCCCAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTTAGGCAACTTAACACATATGGTTTTAGAAAAATTGATCCAGATAAATGGGAGTTTGCAAATGAAGGATTCCTGAGAGGGCACAAGCACCGGTTAGCAAACATAAGGAGAAGGAAGCAACCTTATCAACCTAGTCCTTCCCAACAAGCACAAGCACAAGCACAAGCACAAGGACAAGGTCTCTGTGTTGAAGTTGGACGTTTTGGGCTGGATGAAGAGATTGATCGTTTGAGGCGTGACAAGCAGGTGTTGATGATGGAGCTTGTGAAGCTTAGACAGCAGCAACAGAACACCAGATGCTACCTTGTGGAAATGGATGAAAGGTTACGAGGGACAGAAATTAAGCAGCAACAAATGATGGCTTTCTTAGCTAAAGCTATGAAAAATCCAGCCTTCATTCAGCAGCTATTCCAACTGAAAGAGAAGAGAAAGGAGCTTGAAGAAGCCATGACTAAAAAGAGGAGAAGACCAATTGAGCAAGGACCTGGAGGTGTTGGAGAATCAAGCTGTGGCGGTGAAGGAAGGAACACTGTTAAAGTTGAGCCCCCAGCTTTTGGGGAATATGGATTTGAAGTGTCAGAGCTGGAAGTGCTAGCTATGGAAATGCAAGGTTTTGGTAAGGGGAAGAGAGAACTGGAGGAAGAGCCTGAGCCACTAGAACAGCAAGAACTTGATGAAGGGTTCTGGGAAGAACTGTTCAGTGAGAATTTTGAGGGTGAATTAGACATTCCAACTTCTCAAGGTGAAGGTGAAGATGAAGATGAAGATGTTAATGTGTTGGCCTATCGCTTAGGTTACTTGGGTTCAAGTCCTTTCAATATTGCTCCAGATGAGGCAGTGGAGTCATCCCAGTTGGCAAGACAGTAA 1170 0.4444 MNYLYPVKEEEYLEPSSSTATFHIGGDDEPSMVPPPQPMEGLHEIGPPPFLTKTFDVVDDPITDHVVSWSRGGASFVVWDPHAFSRNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHKHRLANIRRRKQPYQPSPSQQAQAQAQAQGQGLCVEVGRFGLDEEIDRLRRDKQVLMMELVKLRQQQQNTRCYLVEMDERLRGTEIKQQQMMAFLAKAMKNPAFIQQLFQLKEKRKELEEAMTKKRRRPIEQGPGGVGESSCGGEGRNTVKVEPPAFGEYGFEVSELEVLAMEMQGFGKGKRELEEEPEPLEQQELDEGFWEELFSENFEGELDIPTSQGEGEDEDEDVNVLAYRLGYLGSSPFNIAPDEAVESSQLARQ 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2692g00032 389 ProSitePatterns HSF-type DNA-binding domain signature. 89 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2692g00032 389 SMART hsfneu3 46 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2692g00032 389 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 36 265 IPR027725 -
Gabi2692g00032 389 FunFam Heat shock transcription factor 1 43 140 - -
Gabi2692g00032 389 MobiDBLite consensus disorder prediction 370 389 - -
Gabi2692g00032 389 Coils Coil 175 195 - -
Gabi2692g00032 389 Gene3D - 43 140 IPR036388 -
Gabi2692g00032 389 Pfam HSF-type DNA-binding 50 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2692g00032 389 PRINTS Heat shock factor (HSF) domain signature 101 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2692g00032 389 PRINTS Heat shock factor (HSF) domain signature 50 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2692g00032 389 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2692g00032 389 MobiDBLite consensus disorder prediction 252 279 - -
Gabi2692g00032 389 Coils Coil 237 257 - -
Gabi2692g00032 389 SUPERFAMILY "Winged helix" DNA-binding domain 46 139 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2692g00032 Gabi-Chr2692 361564 363647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2692g00032 28 371 HSF AT3G22830 54.255 1.03e-127 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi2692g00032 HSF_DNA-bind 2.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2692g00032 K09419 - gmx:100794264 541.962