Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2692g00023 ATGGTAGTAGGAGATAAAGTGATTTTAGTTCAAATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTGCGTTTGGTTCTGCTCTGCTAGTGAGGCACAAGCTCGAAAAGAAAAAGTATGTCCTCAAGAAGATCCGCCTTGCTCGCCAAACTGACAGAAGCCGTAGGTCCGCCTACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATCAGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAGAAGGCTAATGGTGTTTACTTTCCTGAAGAGAAGCTTTGTCAGTGGCTTGTGCAATTGCTGATGGCACTTGAATACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACGAAAGATCGAGATATACGTCTAGGTGACTTTGGTCTAGCTAAAATGATGACATCTGATGATCTTGCTTCCTCAGTTGTTGGGACTCCAAGTTATATGTGCCCGGAGCTTCTTGCTGATCTACCATATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTATTCATGAAATGGCTGCTCACAAGCCCACTTTTAAAGCTTTTGATATTCAAGCATTGATTATGAAAATAAACAAGTCTATAGTAGTTCCACTGCCAACTATGTATTCTGGTGCCTTCCGACGGCTTGTCAAAAGTATGCTGCGAAAAAATCCAGAGCTTAGGCCAACTGCTGCAGAGTTACTAAATCATCCACATCTTCAGCCATACATACATAAAATTCACCTAAAATTAAGTAACCCCAGAAGTACACTTCCGTTCCAATGGCCTGAGTCAAACTATGTACGGAGAACTCGGTTTATAGAGCCAGAATCTATTTCTACTCTTTCTGATCAAGATAAACGCTTGTCATTAAGCAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAACAAGGTTCTCAGTGTTCTACTCAAAGAGCACATGGATTATCCACTTGTTCAAAAGAGAAGCTCTACGAACAATCCTTTGCCTGTGTCTTTGACGAATGCAATACTAGCAAATCGAAAGCCACAAAGTCCTCAACTGTTAAGAGAACACCAAGATTAAGAGCAGCTAAGGATTCTGCTACTGCGAGAAGGCACACAATGGCACCAACAAAAATATCCAGAACTAGTTCAAAGCATGATTCACTTCCAGCGTCTAATGCACCATCTGTAAAGTTTTCCCCACCAACTCATAGAGCATCACTTCCACTTCCTAAAACAGCCACGGCCACAGCAAGCTTTTACACCAATGTTGGTCTCCTTCGAAATGTGCACTCTCCAGATGTTTCTGTTAATGCACCACGATTTGACAAGATTGAAGAATTCTCAATGGCCTCTTGTGATGATTTGGCACAGTGCTCTTCTAGCTCAGCAGGGAGTGCTGATTGCACAATCACAAAGGACAAGTGTACAATCCAGGTGGACAAATTGCATCAGCGTCGATTTGACACCTCATCATACCAGCAACGTGCGGAGGCATTGGAGGGGTTGTTGGAGTTCAGTGCCCGGCTACTACAGCAACAGAGGTTTGAAGAGCTTGGGGTGTTGCTGAAGCCATTTGGTCCTGAGAAGGTTTCTTCAAGGGAAATAGCTATTTGGTTGACCAAGAGCTTTAAAGAAACACTGGTCTAA 1728 0.4236 MVVGDKVILVQMEQYEILEQIGKGAFGSALLVRHKLEKKKYVLKKIRLARQTDRSRRSAYQEMELISKVRNPFIVEYKDSWVEKGCFVCIVISYCEGGDMAEAIKKANGVYFPEEKLCQWLVQLLMALEYLHANHILHRDVKCSNIFLTKDRDIRLGDFGLAKMMTSDDLASSVVGTPSYMCPELLADLPYGSKSDIWSLGCCIHEMAAHKPTFKAFDIQALIMKINKSIVVPLPTMYSGAFRRLVKSMLRKNPELRPTAAELLNHPHLQPYIHKIHLKLSNPRSTLPFQWPESNYVRRTRFIEPESISTLSDQDKRLSLSNDRALNPSISGTEQGSQCSTQRAHGLSTCSKEKLYEQSFACVFDECNTSKSKATKSSTVKRTPRLRAAKDSATARRHTMAPTKISRTSSKHDSLPASNAPSVKFSPPTHRASLPLPKTATATASFYTNVGLLRNVHSPDVSVNAPRFDKIEEFSMASCDDLAQCSSSSAGSADCTITKDKCTIQVDKLHQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSSREIAIWLTKSFKETLV 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2692g00023 575 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2692g00023 575 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Gabi2692g00023 575 MobiDBLite consensus disorder prediction 373 435 - -
Gabi2692g00023 575 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2692g00023 575 Gene3D Phosphorylase Kinase; domain 1 3 89 - -
Gabi2692g00023 575 FunFam Serine/threonine-protein kinase Nek2 12 94 - -
Gabi2692g00023 575 Gene3D Transferase(Phosphotransferase) domain 1 90 286 - -
Gabi2692g00023 575 CDD STKc_Nek 14 269 - -
Gabi2692g00023 575 FunFam Serine/threonine-protein kinase Nek3 97 342 - -
Gabi2692g00023 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Gabi2692g00023 575 MobiDBLite consensus disorder prediction 399 426 - -
Gabi2692g00023 575 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 531 - -
Gabi2692g00023 575 SUPERFAMILY Protein kinase-like (PK-like) 11 330 IPR011009 -
Gabi2692g00023 575 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2692g00023 Gabi-Chr2692 302408 309898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2692g00023 21 270 MAP Kinase Kinase Kinase AT1G53570 32.549 6.62e-38 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gabi2692g00023 Pkinase 2.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2692g00023 K08857 - gmx:100810347 861.292