Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2692g00012 ATGGAAGAAGGTGAACCAGAATCGAAGAAAGACGTTGAGGTAGCTCCGGCGCTCATCGCGGTTCACCCGAACCAAGACTCCGTCGCCGTGGCGGTTGGACCGGAGCTCCGTGTGTTCGACCTCCATGGTGGTTGTGCAGCTTCTTTAACAGATGATTCTATTGGTGAGCCATTTCATAAGGATAATATTAGAGCTATTGAGTTTGGTGCAAATGGAAAACTCTTCGTATCCGCCGGTGATGATAAAACCGTTAAGATATGGTCACCACAATCTTGGCGCTGCATCTGTACCGTGTCTTCGGAAAAGAGAGTCACTGCGGTTGCCATAAGCAATGATGGATCTCATGTGTGTTTCGCTGATAAATTTGGCCTTGTTTGGGTTGTTGATCTCAATCATGCAGTAGCTTGTAACAAACCAACACCGCTTCTTTCTCACTATTGCAGTATCATAACTAGCTTGGAGTTTTCTCCAGATGGTCGGTTTATTTTAAGTGCCGATAGGGATTTTAAAATTCGTGTTACTAATTTTCCCGACAAGCCCTTGAATGGAGCTCATCAGATACAAAGTTTCTGTCTTGGACACACAGAGTTTGTCTCCTGCCTTGGCTTCCTTCATGTTCAAGAATGCCCTCAAGACCTTCTTCTCTCTGGCAGTGGTGATTCAACAGTGCGATTGTGGGATATCTCCTCCGGAGCACTCCTAGATACTTGTGAGGTTGCAATTAAGGCAGGGCTTTTAGAGTCTAATGGTAAAGCAGAGGAGCATGGCCATGCTGTTACTGATTTATGCACCACCCTGGATGGTTTGCTTGTTGCAGTGGCCATTCAGAGCTTGCAAGGAATAGTATTGTTGAGTTGCAATGTTTCTGCACAAACACTTTCTGTTGCCAAGGTGGTTTCTATTGCAGGAGAGGCCTTTATCCCTACCTGCCTGGGGAACATCCCGTCTACTGGGAAATTGTGGATGGTTACAGGTGTCTCTAATTTACCTGGTTGTAGTTACCCCTCTTTGGCCCGTGTCCGAGTAATTTCTGGTATTGATGTTGAGCAAGAGCCAGTTGTCCTGGGAGATGATGAGATACCTGGGGGAGAAAAGCTGCGAGAAACGTTGCAAGGAACTGCATCCGTTGACGACAATACATTTTTGGCTGCAGCTGAAGCTGTGAAAACAGCAATGTGCAACCTATTAATAAAAAAGCAATACCCCGCAGAGAACAGAGAATCTAGGAAGAAAACCAGAAATGATAGAAAACTCAAAGGGTAG 1263 0.4568 MEEGEPESKKDVEVAPALIAVHPNQDSVAVAVGPELRVFDLHGGCAASLTDDSIGEPFHKDNIRAIEFGANGKLFVSAGDDKTVKIWSPQSWRCICTVSSEKRVTAVAISNDGSHVCFADKFGLVWVVDLNHAVACNKPTPLLSHYCSIITSLEFSPDGRFILSADRDFKIRVTNFPDKPLNGAHQIQSFCLGHTEFVSCLGFLHVQECPQDLLLSGSGDSTVRLWDISSGALLDTCEVAIKAGLLESNGKAEEHGHAVTDLCTTLDGLLVAVAIQSLQGIVLLSCNVSAQTLSVAKVVSIAGEAFIPTCLGNIPSTGKLWMVTGVSNLPGCSYPSLARVRVISGIDVEQEPVVLGDDEIPGGEKLRETLQGTASVDDNTFLAAAEAVKTAMCNLLIKKQYPAENRESRKKTRNDRKLKG 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2692g00012 420 SMART WD40_4 136 175 IPR001680 GO:0005515
Gabi2692g00012 420 SMART WD40_4 91 129 IPR001680 GO:0005515
Gabi2692g00012 420 SMART WD40_4 183 227 IPR001680 GO:0005515
Gabi2692g00012 420 SMART WD40_4 50 88 IPR001680 GO:0005515
Gabi2692g00012 420 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 15 101 - -
Gabi2692g00012 420 Gene3D - 102 302 IPR015943 GO:0005515
Gabi2692g00012 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 88 - -
Gabi2692g00012 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 191 231 - -
Gabi2692g00012 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 236 IPR001680 GO:0005515
Gabi2692g00012 420 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 102 354 - -
Gabi2692g00012 420 Gene3D - 16 101 IPR015943 GO:0005515
Gabi2692g00012 420 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 25 412 IPR028884 GO:0036265
Gabi2692g00012 420 SUPERFAMILY WD40 repeat-like 18 273 IPR036322 GO:0005515
Gabi2692g00012 420 PANTHER WD40 REPEAT PROTEIN 4 15 412 IPR028884 GO:0036265
Gabi2692g00012 420 ProSitePatterns Trp-Asp (WD) repeats signature. 214 228 IPR019775 -
Gabi2692g00012 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 88 IPR001680 GO:0005515
Gabi2692g00012 420 Pfam WD domain, G-beta repeat 59 88 IPR001680 GO:0005515
Gabi2692g00012 420 Pfam WD domain, G-beta repeat 191 227 IPR001680 GO:0005515
Gabi2692g00012 420 Pfam WD domain, G-beta repeat 144 173 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2692g00012 Gabi-Chr2692 173199 175975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2692g00012 24 182 Eukaryotic Initiation Factors Gene Family AT2G46290 24.706 2.01e-06 47.8