Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2690g00028 ATGTCAGCGTTTGAGGCCAATAAATTAAGGCAAAGAGTGGAAGATGAAGAGGCCACAGAAAGCATATGCCCAAAAATGTCTTCCCCTTTCTTTCAGAACCAAGATTGTGAGATTTTGCAGGAGCCTTCTGACATTTTGTTCGAATCATGTTCAAGCAATGGTGTTCGTGACTCTATCTATGATTCTCTTTCCTTCGATATGGTTGACTTCTCCATGGATTCACAGTCACCAATCAAAGGAAACCACAACGAGCGAAAGCAATTGGTGGTTAAGTCTGAAGGTAAACAAGAGCACACTGAGAAAATGTCGTATATAGGTGTAAGGAAAAGGCCATGGGGAAAATTTGCAGCAGAGATTAGAGATACAACGAGGAATGGCACAAGGGTTTGGCTTGGAACCTTTGATAGTGCTGAGTCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAATGCTCTACTCAATTTTCTTGCAATTTTTTTGTTGTTGGTTTCAGACTTTCAGCTAATGTTGTCAACGAATTCAAGTGATAGAGACTCGTCATAG 558 0.4122 MSAFEANKLRQRVEDEEATESICPKMSSPFFQNQDCEILQEPSDILFESCSSNGVRDSIYDSLSFDMVDFSMDSQSPIKGNHNERKQLVVKSEGKQEHTEKMSYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFDSAESAALAYDQAAFSMRGHNALLNFLAIFLLLVSDFQLMLSTNSSDRDSS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2690g00028 185 Pfam AP2 domain 104 154 IPR001471 GO:0003700|GO:0006355
Gabi2690g00028 185 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Gabi2690g00028 185 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Gabi2690g00028 185 ProSiteProfiles AP2/ERF domain profile. 103 161 IPR001471 GO:0003700|GO:0006355
Gabi2690g00028 185 Gene3D AP2/ERF domain 103 162 IPR036955 GO:0003700|GO:0006355
Gabi2690g00028 185 SMART rav1_2 103 167 IPR001471 GO:0003700|GO:0006355
Gabi2690g00028 185 FunFam Ethylene-responsive transcription factor 2 102 162 - -
Gabi2690g00028 185 CDD AP2 104 160 IPR001471 GO:0003700|GO:0006355
Gabi2690g00028 185 SUPERFAMILY DNA-binding domain 104 161 IPR016177 GO:0003677
Gabi2690g00028 185 PANTHER DNA-BINDING DOMAIN 76 161 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2690g00028 Gabi-Chr2690 369852 370409 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2690g00028 103 162 AP2-EREBP Transcription Factor Family AT3G23240 83.333 1.97e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2690g00028 AP2 3.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2690g00028 K14516 - gmx:100527364 186.422