Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2690g00023 ATGGCACTGGACAAGAACTACTCCTACAAGCTTGGATATCAAGCTCTCCCACCCATCAAAACCCTCCACTACCCACCACAACCTGCTTCAGACTATGCTTTTCCCATATTTGCCATTGCTGTGCTCAGCATATTGGCCACCGTTTTGTTGCTCCTCAGTTACTTTACTTTTTTGAGCAAATGCTGCTCAAACTGGCATCAAGTTAACCCGGTAAGATGGATTTCCATCCTGCGAGCTCGACCGAACGAGGATCCCTTCATAGCATTGTCTCCTGCCATGTGGAACCGGGGGCTTGATGAATCTGTCATCAGAGAAATCCCAACTTTTCAGTTCATAAAAGGAGAAGGTGGGAATCAAAGTGTGTATGGCTGCGTGGTTTGTTTGACTGAGTTTCAAGAACAGGACGTGCTAAAAGTTCTACCTAATTGCAGCCATGCCTTTCACTTGGATTGCATTGACATTTGGCTTCAGACCAATGTCAATTGTCCTCTTTGTAGATCAAGCATTTCAGGCAACACACACTGTCCATTGGACCATATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAATTACCCTCTAACATGATGGGTAGTGATGAAGATTTTGTGGTTATTGAACTTGGGAGAGTATTGCCACAGGCGCAACAAGAAAGAAATGACTCAAGGGGAAGCCTAGCACAGAGTAGAAACCACTCTACAAGGAAGGTGGAGCAGCAGAAGCTTGGAAACTTGAAACCAAGGAAGTGCCACCATGTTTCCATCATGGGAGATGAGTGTATTGATATTAGAAAGAAAGACGACCAGTTTTGTATTGAGCCTATTAGAAGATCTTTCTCAATGGATTCTGCAAAAGATAGACAACTTTACTTGGATGCTCAAGCCATTATACAGCATAATAGGCATCAGAATGAGGCTAGTGCTAGTGAGGATTGTAATAGCAGAGGTCGAAGAGCATTCTTTCCATTTTGTTATGGAAAGGGATCCAAAAATGCAGTCCTTCCTTTGGAGAAGGATGTTTAA 1023 0.435 MALDKNYSYKLGYQALPPIKTLHYPPQPASDYAFPIFAIAVLSILATVLLLLSYFTFLSKCCSNWHQVNPVRWISILRARPNEDPFIALSPAMWNRGLDESVIREIPTFQFIKGEGGNQSVYGCVVCLTEFQEQDVLKVLPNCSHAFHLDCIDIWLQTNVNCPLCRSSISGNTHCPLDHIIAPSSSPQDSQLPSNMMGSDEDFVVIELGRVLPQAQQERNDSRGSLAQSRNHSTRKVEQQKLGNLKPRKCHHVSIMGDECIDIRKKDDQFCIEPIRRSFSMDSAKDRQLYLDAQAIIQHNRHQNEASASEDCNSRGRRAFFPFCYGKGSKNAVLPLEKDV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2690g00023 340 MobiDBLite consensus disorder prediction 215 233 - -
Gabi2690g00023 340 CDD RING-H2_EL5-like 124 166 - -
Gabi2690g00023 340 SUPERFAMILY RING/U-box 123 171 - -
Gabi2690g00023 340 FunFam E3 ubiquitin-protein ligase ATL6 89 172 - -
Gabi2690g00023 340 SMART ring_2 124 165 IPR001841 -
Gabi2690g00023 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 172 IPR013083 -
Gabi2690g00023 340 MobiDBLite consensus disorder prediction 215 245 - -
Gabi2690g00023 340 PANTHER RING-H2 FINGER PROTEIN ATL16 25 337 IPR044600 GO:0016567|GO:0016740
Gabi2690g00023 340 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Gabi2690g00023 340 Pfam Ring finger domain 124 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2690g00023 Gabi-Chr2690 309696 310718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2690g00023 24 303 C3H Transcription Factor Family AT1G04360 45.338 2.67e-74 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2690g00023 K19041 - gmx:100809883 536.184