LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2690g00020	ATGGGAAAAACCAGCAAATCCGAGAAGCCCCATCTCCGAAAATCGTCGAAAGACCATTCGCCAGACCCCATTGAATTGAGTTCCAAGACCCCACAGAAAACCAATCCACCGCGCACGCGCAACCGTGGCGTGGCGCTCTCCGTCACCGACGTCAGGAAGGTCGCTGAGGGCCTTCAACGCCATGATACGACATCGTCTCAGGCCAAAACTGTAAGGAGGAAGATCGCATTGCCTTCCCCTCTTAAACACATGACTGCTCCTAATGAACCCTTTAAGCTTCCGGAGAAGTATGAAATTCTGGCTGAGTTCTTTGATGGCTTAGATAGTTCGATTCGATTATTGCGCTTGAAAGGCTCTAAGACTTCCTTCACAAATATTAGCCGTAAGGTTGAATGTTTAACTGACAGGAGGTTTACACATAGTCATCTGGCCAAGTTGAAATTTATCTTGCCTGAGGCAATTGTTGTAAAAAGATTACTTGTGTTTGATGAAGGGACAAGTTGCATGAAGCCAGATCTACATGTTACTATAGATCTTGATGCTCTGGAGTCTGATCGTGATTGTGGGAGTGTGCCTCTCAGGAAGTTATTTCGCTCGCGGCTCAGAGATTTTTGTGAATCCCATCCTGAGGGTGATGAAATTCCAGAGGAAACATTGCCTGAGCCATTCAATCACCCAAAGCAAGGCCGTATTCCAGACATATTGATAACTCCCTCCCCATCATTCACTACAGGGACATTATTTGATGCATGTGCAGCTCATCCTCCCAAAATATTGTCAGCATGCATGCTGAATAATGACATAGTAGATAATACAGAGCATGCTAACATAGAAAAAACAGTTTCTGTCAAGACATCAATTGAAGCACTTGACCAGCGACCAACACCAGCCTCTCATATGTCTCAATCTTTTAGAAGGAGCTTTTCTCAGAAATCTAAGGAAAATGGAGAAGATGATGCACCACAAGAATTTCCATCAGATTCATCCCAACCCCTGGCTTTTACAGCTTCAGCGTCAAGCCTGAAGAAAAAACATCCCATTGTGGGCACTAAATCTCATTCCAGAACATTCACAGATAAGTTGGCTTCAGAAGCAGCTAGTAGTGAAATGTGTACAACAATTTGTGCTTCTCAAGATTGCCTGAGTGATCCACCTGCTACTCCATGCAAAGATGTGCCTCTCGAGAGCATTGATGCCATGTCAACGCCAGCTAAACTAGTTTCTACTCCGTTAAGGCTGATGTCTGCCACACCTGCATTGTCTACACCTAAAAGACATATGTGCCCCAATGACAACTCTGCCAGTACAAACAAGTTGGTTAGGCGTCCACCGCGTTCAAGGTCATTGAAATTTGACACTCCAGTGAAAAACAAGCAGACAGAGAGTGAAGCTGATAATGGTGGCTTATCAATTGATGATGATATTTTTGATATCCTCCCAGAGAATCTTCTCCAATCGATTAGGGAAAAGGAAAGAGTGGCAATGGAGGAAAGAGATCCAGCTGTCTCACAAGCAAAGAGGCGGCAAAAAATGATTGCCAGACTCCCTAAGCTCTTTAACATGATCCACCTATTATTTCATTCAATAAACCACTCTGTCATCACGAAAGAGGAGCTTGTGAGTAAGATAATCTCAGGCCATTGTGATATTGTTGGCAGAGGTGAAGTTGAAGAACAGCTGAATTTGTTGCTAGAACTAGTACCAGAATGGATTTCTGAGAAGTCCGCCTCTAGTGGGGATCTCCTATTCTGCATTAATAAAATGTTGAACCCTGATACAATACGAGCATCACTTGAAGAAGCAAAGTGA	1809	0.4384	MGKTSKSEKPHLRKSSKDHSPDPIELSSKTPQKTNPPRTRNRGVALSVTDVRKVAEGLQRHDTTSSQAKTVRRKIALPSPLKHMTAPNEPFKLPEKYEILAEFFDGLDSSIRLLRLKGSKTSFTNISRKVECLTDRRFTHSHLAKLKFILPEAIVVKRLLVFDEGTSCMKPDLHVTIDLDALESDRDCGSVPLRKLFRSRLRDFCESHPEGDEIPEETLPEPFNHPKQGRIPDILITPSPSFTTGTLFDACAAHPPKILSACMLNNDIVDNTEHANIEKTVSVKTSIEALDQRPTPASHMSQSFRRSFSQKSKENGEDDAPQEFPSDSSQPLAFTASASSLKKKHPIVGTKSHSRTFTDKLASEAASSEMCTTICASQDCLSDPPATPCKDVPLESIDAMSTPAKLVSTPLRLMSATPALSTPKRHMCPNDNSASTNKLVRRPPRSRSLKFDTPVKNKQTESEADNGGLSIDDDIFDILPENLLQSIREKERVAMEERDPAVSQAKRRQKMIARLPKLFNMIHLLFHSINHSVITKEELVSKIISGHCDIVGRGEVEEQLNLLLELVPEWISEKSASSGDLLFCINKMLNPDTIRASLEEAK	602

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2690g00020	602	CDD	Cdt1_c	478	599	IPR032054	-
	Gabi2690g00020	602	PANTHER	DNA REPLICATION FACTOR CDT1	5	602	IPR045173	GO:0003677\|GO:0030174\|GO:0071163
	Gabi2690g00020	602	FunFam	CDT1-like protein a chloroplastic	472	602	-	-
	Gabi2690g00020	602	Gene3D	-	473	602	IPR038090	-
	Gabi2690g00020	602	SMART	CDT1_2	93	221	IPR014939	-
	Gabi2690g00020	602	SUPERFAMILY	"Winged helix" DNA-binding domain	87	223	IPR036390	-
	Gabi2690g00020	602	MobiDBLite	consensus disorder prediction	1	24	-	-
	Gabi2690g00020	602	MobiDBLite	consensus disorder prediction	291	331	-	-
	Gabi2690g00020	602	MobiDBLite	consensus disorder prediction	291	309	-	-
	Gabi2690g00020	602	MobiDBLite	consensus disorder prediction	445	459	-	-
	Gabi2690g00020	602	MobiDBLite	consensus disorder prediction	1	45	-	-
	Gabi2690g00020	602	MobiDBLite	consensus disorder prediction	426	442	-	-
	Gabi2690g00020	602	Pfam	DNA replication factor Cdt1 C-terminal domain	482	575	IPR032054	-
	Gabi2690g00020	602	MobiDBLite	consensus disorder prediction	25	42	-	-
	Gabi2690g00020	602	CDD	Cdt1_m	78	227	IPR014939	-
	Gabi2690g00020	602	MobiDBLite	consensus disorder prediction	419	468	-	-
	Gabi2690g00020	602	Pfam	DNA replication factor CDT1 like	93	157	IPR014939	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2690g00020	Gabi-Chr2690	289985	293139	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2690g00020	401	600	Core DNA Replication Machinery Family	AT2G31270	53.302	2.32e-54	192

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2690g00020	K10727		-	qsa:O6P43_006919	586.26