Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2690g00005 ATGGAATTCAGCTACCAAGAAGACTCCAAGAGCTCCAGTGAAGAAATTGATCGATCATCTGAACAGAATGATGACATGGGAACTGGAAGATCCTATGAGTGTGTCTTTTGCAAGAGAGGCTTCACCACTGCACAAGCTTTAGGTGGACACATGAACATACATAGAAAAGATAGAGCCAATAACAAGACCAAACCTAATTTCCCTCCTTCAAGTTCAAGCAATAAGGTTGATGTGGACAACTATGCAGATCTAGGGTTCTATTCAGCAATTCCAAGCAATCTTGGAAGAGGGAATTACTATTCCACTGGTCCTGATCATCGTGAGGTAGACATTAATAACAATTACCATCAAATATATTTTCCTGCATACGCATGTGGTACTAGATCACCTTCACATGTACACTATAGTACTGAGGTCTTGTGTGGAGAAAACCAAAGGGATCATCGGGTGCACCTCTTTGGACAAGATTGGAGGAAAAGTGATTTGAGTTTGTACACTAATCCATTATGTGAACATGAAAATAAAGACAAGATTGAAAACAACAGTGAAGAGGATGAACTCGATTTGGAGCTTAGACTTGGTCATCACCCTTAA 594 0.4007 MEFSYQEDSKSSSEEIDRSSEQNDDMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNKTKPNFPPSSSSNKVDVDNYADLGFYSAIPSNLGRGNYYSTGPDHREVDINNNYHQIYFPAYACGTRSPSHVHYSTEVLCGENQRDHRVHLFGQDWRKSDLSLYTNPLCEHENKDKIENNSEEDELDLELRLGHHP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2690g00005 197 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Gabi2690g00005 197 Gene3D Classic Zinc Finger 6 83 - -
Gabi2690g00005 197 PANTHER OS07G0101800 PROTEIN 1 196 - -
Gabi2690g00005 197 MobiDBLite consensus disorder prediction 175 197 - -
Gabi2690g00005 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Gabi2690g00005 197 MobiDBLite consensus disorder prediction 52 74 - -
Gabi2690g00005 197 MobiDBLite consensus disorder prediction 1 27 - -
Gabi2690g00005 197 MobiDBLite consensus disorder prediction 7 24 - -
Gabi2690g00005 197 Pfam C2H2-type zinc finger 32 56 - -
Gabi2690g00005 197 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2690g00005 Gabi-Chr2690 116675 117268 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2690g00005 32 96 C2H2 Transcription Factor Family AT5G43540 51.515 4.21e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2690g00005 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2690g00005 - - gmx:102670484 275.018