Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2690g00004 ATGGAAGGAAACTATCTGAACCGAAACACTCATAGAGAAGATAGCTTTGGCTTTGAGGAGCATTCATGGGGAACTTCATGGCCAGCAAGAAACTATGCCTGCAGCTTTTGCAAGAGAGAGTTCAGGTCTGCTCAAGCTTTGGGTGGACACATGAATGTTCATAGAAGGGATAGGGCAAGATTGAGATCATCTTTATCTTCATGGGTTTCTGAGTGCCCTAAACCTAACCCTAGCACTAACCCTAATAACCCAACTCTTCTTTCACCCTCTTCACAATCTCCTTTATCTGATCATGAGTTTTTGAATAACACACATCCTTCTCCACTTTATAGTCCATGTCTGACTTTGTCTTCTTCTTCTTCACCCTCTCCAGCTTCTACCAGTGGAGATAAGAAACCAAGACTCACATCTTCTCACCAGTTTCCTCTTTTGTGTCCTCAAAGCAAGGAAATAATTAAGATGAGTAAGAACACAAGAAGTACTTTCGGTGTTGAGGAAATGAGTCAGGGTTATGTTGATGAGGACGAGCACAAGGTTTTCAAGAGTAATGAGCAAAACATTACGTTGGAATTAGGAATAGGGTTGTTTAAACACCAAGAGGAGAAGATAGATTTGGAGCTTCGACTCGGGAATTTCTAG 639 0.4163 MEGNYLNRNTHREDSFGFEEHSWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPSTNPNNPTLLSPSSQSPLSDHEFLNNTHPSPLYSPCLTLSSSSSPSPASTSGDKKPRLTSSHQFPLLCPQSKEIIKMSKNTRSTFGVEEMSQGYVDEDEHKVFKSNEQNITLELGIGLFKHQEEKIDLELRLGNF 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2690g00004 212 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Gabi2690g00004 212 Coils Coil 195 212 - -
Gabi2690g00004 212 Pfam C2H2-type zinc finger 32 56 - -
Gabi2690g00004 212 MobiDBLite consensus disorder prediction 83 140 - -
Gabi2690g00004 212 PANTHER OS07G0101800 PROTEIN 13 211 - -
Gabi2690g00004 212 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Gabi2690g00004 212 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Gabi2690g00004 212 MobiDBLite consensus disorder prediction 66 140 - -
Gabi2690g00004 212 Gene3D Classic Zinc Finger 17 74 - -
Gabi2690g00004 212 SMART c2h2final6 32 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2690g00004 Gabi-Chr2690 96057 96695 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2690g00004 20 210 C2H2 Transcription Factor Family AT3G23130 40.000 5.60e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2690g00004 zf-C2H2_6 5.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2690g00004 - - gmx:102662947 259.225