Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2690g00001 | ATGGGCATTCCAGAAAACATTGTTGTCGGTTCTCATGTTTGGGTTGGAGATCCAGAATTAGTCTGGATTGATGGACAAGTACTGAATATTAATGGGGAGGAAGCTGAAATTCAAACTAGCAATGGGAAGAAGGTTTTTTCCCGTTTGTCAAAATTATATCCCAAGGATACAGATGCTCCTACTGACGGAGTTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGGAGTGCTGCATAATTTGGAAAATAGATACAAGATCAATGAAATATATACTTATACTGGAAATATTCTTATTGCAATCAATCCCTTCCAAAGTCTTCCACACCTGTATGATGCTAATGCGATGAAAATCTACAAGGGAGCAACAATTGGAGATTTAAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGGGAAATGATTACTGAGGAGAAAAACAACTCTATTCTGGTTAGTGGTGAGAGTGGCGCTGGTAAGACAGAAACCACCAAAATGCTTATGTGTTACCTGGCATATTTGGGTGGTCACACTGCATCTGAAGGACGGACTGTTGAACAACAAGTACTAGAATCAAACCCAGTTCTTGAAGCATTTGGTAATGCAAAAACTGTTAGAAATGACAATTCCAGCCGTTTTGGAAAGTTTGTTGAGATTCAATTTGATAAGTATGGACGAATATCCGGTGCAGCGATTAGAACTTATCTTCTTGAGAAATCTCGTGTTTGCCAAATCTCAGATCCTGAGCGTAACTATCACTGTTTTTACCTTCTCTGTGCCTCTCCCCCAGAGGAAAAGGAGAAATATAAGTTGGGAGATCCTAGATCATTTCACTACCTTAATCAATCCAGTTGCTATGAATTAGCTGGTGTTAATGCTGCTCAAGAGTATCTTAGCACCAAGAGAGCCATGGATATTGTGGGAATCAGTCAGGAGGAGCAGGATGCAATTTTCAGAGTTATAGCTGCTATTCTTCATCTTGGAAACATTAAGTTTGCAAAATCCGAAGAAGAAACTGATTCATCAGTTTTAGAAGATGAAGAATCCAAGTTCCATCTCCAAATAACAGCAGAACTTCTCATGTGTGATCCTAATGCTTTGGAAGATGCACTTTGTAGGCGCGTGATGATTACCCCAGAAGAAATCATCAAAAGAAGTCTTGATCCTCTTGGTGCAACAGTTAGCAGGGATGGTTTAGCCAAGACACTATATTCTCGTTTATTTGACTGGTTAGTCCATAAAATTAATGTCTCCATTGGGCAGGATTCTAGCTCAAAATGTCTAATTGGCGTTCTTGACATATATGGCTTTGAAAGCTTTCGAACTAATAGTTTTGAGCAGTTTTGTATTAATTTCACAAATGAAAAGCTGCAGCAACACTTCAACCAGCATGTGTTTAAGATGGAGCAAGAGGAATACACAAAAGAAGGCATTGACTGGAGCTACTTAGAATTTGTAGATAACCAAGATGTATTGGATCTCATTGAAAAGAAACCGGGTGGAATAATTTCTCTGCTTGATGAAGCTTGTATGTTTCCAAAGTCAACTCATGAAACTTTTTCACAAAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATCAAGCCAAAATTGGCACGCTCAGACTTCACTGTTGTTCATTATGCTGGGGAGGTCCAGTATCAGTCTGAGCAGTTTATAGACAAGAACAAGGACTATGTTGTTCCTGAGCATCAATACATGTTAAGTTCTTCCAAATGTTCATTTGTATCAGGCCTTTTCCCTCCACTATCTGAGGAGACGGCCAAATCTGCTAAGTTTTCTTCTATTGGTTCTCGTTTTAAGCTACAACTACAACAATTGATGGATGCGCTCAATTTGACAGAGCCCCACTATATTAGATGTGTGAAGCCAAATAATCTATTAAAACCTGGCATATTTGAGAATATGAACGTCATCCAACAATTACGTTCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTCCCCACACACAGGACCTTTCATGAATTTTTAACTCGGCTAGGAATTCTTGCTCCTGAGGTTCTTCGTGGGAGCTTCGATGAAAAGGATTCTTGTAAAAAGATTTTGGAGAAGGTTGGGCTGACAGGTTATCAGATAGGGGAAACACAAGTATTCTTAAGAGCTGGTCAGATGGCTGAACTGGATGCCCAGAGAGCATGCCTGCTTAGCAATTCTGCAACAGTTATCCAAAAGCAGATTAAAACCCATTTTAGTCGGAAAACATATATTGCATTGCGAAAGTCCTCTGTCTTTGTGCAATCCATTTGCAGAGGAGAACTGGCTCGGAGATCATATTATCACATGAAGAGAGAAGCAGCTGCAGTCAGAATTCAAAAGCATATGCTCGGAAAACTAGCCAGAAAATGGTACACCAAAATAAAGTTTTCTGCCATTGTCTTGCAGACAGGTTTCCGGGCAATGGATGCTTGTGATAAATTGAGATACAGAAAGCAAACTTGTGCCTCAACTAGTATTCAGTCCTATTGGCGGCGTCATAAAGCTCTCTTTAATTATCAGAACCTTAAGAAAGCGGCAATGATCTCACAAAGCGTCAATCACTCCAGGGATGAACATGAACAGAAGGTTTTGGAGATATCAGTGGAACATGAAAGTCCTTCAGTGGAAGAACCTTCAAATCCTTTTCAAGAAGAATCCTCAAGTCCTTTACAAGATGATGAAAGCATTGAAGCTATCAAGGATTCCTCTAGTCCTCTCGAAGACATTGAAAAGATTGAGGCTCTTACTGTTGAAATAGAAAACTTGAAGGTCATGTTGCAATCAGAAAAACAAAGAGCTGATGAATTTGAAAGGAAATATGTAGAAGCTGAAGGATCCAGCGAAGAGTTACAGAAAAAGCTTGCAGAAACTGAAAAAAGAGTATATCAGCTTCAGGACTCATTGAACAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTGAAGACGATCTTAAGTACTTCATCAAGATTGAGTTCAACTTTTCGACCTATTGCTAGAGTTGATGTTGCTTCCAGTAACTCTGATACTTCATCCACAGACTCTGATTTCACGTTTCCAGCTCCTGTTTCGAATCCAGAAACTCTTTCTTCCCCCAAGCCCAAACCTTTTCAACTAGTAGTTCAGGATATCACTGCAGTAGATGGATCAGGATCTGAAAGTGAAAAGGAGGGTTCATTTGATGATTTCTTCTAG | 3237 | 0.397 | MGIPENIVVGSHVWVGDPELVWIDGQVLNINGEEAEIQTSNGKKVFSRLSKLYPKDTDAPTDGVDDMTKLAYLHEPGVLHNLENRYKINEIYTYTGNILIAINPFQSLPHLYDANAMKIYKGATIGDLSPHVFAIAEAAYREMITEEKNNSILVSGESGAGKTETTKMLMCYLAYLGGHTASEGRTVEQQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKYGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSSCYELAGVNAAQEYLSTKRAMDIVGISQEEQDAIFRVIAAILHLGNIKFAKSEEETDSSVLEDEESKFHLQITAELLMCDPNALEDALCRRVMITPEEIIKRSLDPLGATVSRDGLAKTLYSRLFDWLVHKINVSIGQDSSSKCLIGVLDIYGFESFRTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGIDWSYLEFVDNQDVLDLIEKKPGGIISLLDEACMFPKSTHETFSQKLYQTFKDHKRFIKPKLARSDFTVVHYAGEVQYQSEQFIDKNKDYVVPEHQYMLSSSKCSFVSGLFPPLSEETAKSAKFSSIGSRFKLQLQQLMDALNLTEPHYIRCVKPNNLLKPGIFENMNVIQQLRSGGVLEAVRIKCAGFPTHRTFHEFLTRLGILAPEVLRGSFDEKDSCKKILEKVGLTGYQIGETQVFLRAGQMAELDAQRACLLSNSATVIQKQIKTHFSRKTYIALRKSSVFVQSICRGELARRSYYHMKREAAAVRIQKHMLGKLARKWYTKIKFSAIVLQTGFRAMDACDKLRYRKQTCASTSIQSYWRRHKALFNYQNLKKAAMISQSVNHSRDEHEQKVLEISVEHESPSVEEPSNPFQEESSSPLQDDESIEAIKDSSSPLEDIEKIEALTVEIENLKVMLQSEKQRADEFERKYVEAEGSSEELQKKLAETEKRVYQLQDSLNRMISSMSSQVAELKTILSTSSRLSSTFRPIARVDVASSNSDTSSTDSDFTFPAPVSNPETLSSPKPKPFQLVVQDITAVDGSGSESEKEGSFDDFF | 1078 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2690g00001 | 1078 | FunFam | Class V myosin | 440 | 585 | - | - | |
| Gabi2690g00001 | 1078 | SMART | MYSc_2a | 56 | 734 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gabi2690g00001 | 1078 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 37 | 786 | IPR027417 | - | |
| Gabi2690g00001 | 1078 | MobiDBLite | consensus disorder prediction | 882 | 916 | - | - | |
| Gabi2690g00001 | 1078 | Pfam | IQ calmodulin-binding motif | 760 | 779 | IPR000048 | GO:0005515 | |
| Gabi2690g00001 | 1078 | Pfam | IQ calmodulin-binding motif | 786 | 804 | IPR000048 | GO:0005515 | |
| Gabi2690g00001 | 1078 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gabi2690g00001 | 1078 | PRINTS | Myosin heavy chain signature | 483 | 511 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gabi2690g00001 | 1078 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gabi2690g00001 | 1078 | PRINTS | Myosin heavy chain signature | 430 | 458 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gabi2690g00001 | 1078 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gabi2690g00001 | 1078 | Pfam | Myosin N-terminal SH3-like domain | 10 | 45 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Gabi2690g00001 | 1078 | MobiDBLite | consensus disorder prediction | 1018 | 1050 | - | - | |
| Gabi2690g00001 | 1078 | MobiDBLite | consensus disorder prediction | 886 | 906 | - | - | |
| Gabi2690g00001 | 1078 | CDD | MYSc_Myo11 | 76 | 721 | IPR036018 | - | |
| Gabi2690g00001 | 1078 | Gene3D | - | 736 | 785 | - | - | |
| Gabi2690g00001 | 1078 | Gene3D | - | 786 | 836 | - | - | |
| Gabi2690g00001 | 1078 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 787 | 863 | IPR027417 | - | |
| Gabi2690g00001 | 1078 | ProSiteProfiles | Myosin motor domain profile. | 62 | 733 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Gabi2690g00001 | 1078 | Gene3D | - | 667 | 734 | - | - | |
| Gabi2690g00001 | 1078 | Gene3D | - | 440 | 624 | - | - | |
| Gabi2690g00001 | 1078 | MobiDBLite | consensus disorder prediction | 1018 | 1046 | - | - | |
| Gabi2690g00001 | 1078 | FunFam | Myosin 2 | 312 | 428 | - | - | |
| Gabi2690g00001 | 1078 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 312 | 602 | - | - | |
| Gabi2690g00001 | 1078 | ProSiteProfiles | IQ motif profile. | 736 | 763 | IPR000048 | GO:0005515 | |
| Gabi2690g00001 | 1078 | Gene3D | Kinesin motor domain | 65 | 663 | IPR036961 | - | |
| Gabi2690g00001 | 1078 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Gabi2690g00001 | 1078 | Coils | Coil | 925 | 980 | - | - | |
| Gabi2690g00001 | 1078 | SMART | iq_5 | 831 | 853 | IPR000048 | GO:0005515 | |
| Gabi2690g00001 | 1078 | SMART | iq_5 | 735 | 757 | IPR000048 | GO:0005515 | |
| Gabi2690g00001 | 1078 | SMART | iq_5 | 783 | 805 | IPR000048 | GO:0005515 | |
| Gabi2690g00001 | 1078 | SMART | iq_5 | 758 | 780 | IPR000048 | GO:0005515 | |
| Gabi2690g00001 | 1078 | FunFam | Myosin heavy chain | 252 | 307 | - | - | |
| Gabi2690g00001 | 1078 | Gene3D | - | 252 | 310 | - | - | |
| Gabi2690g00001 | 1078 | ProSiteProfiles | IQ motif profile. | 784 | 808 | IPR000048 | GO:0005515 | |
| Gabi2690g00001 | 1078 | ProSiteProfiles | IQ motif profile. | 759 | 788 | IPR000048 | GO:0005515 | |
| Gabi2690g00001 | 1078 | PANTHER | MYOSIN | 54 | 1005 | - | - | |
| Gabi2690g00001 | 1078 | Pfam | Myosin head (motor domain) | 64 | 721 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2690g00001 | Gabi-Chr2690 | 50262 | 78090 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2690g00001 | 1 | 984 | Myosins gene family | AT1G54560 | 63.865 | 0.0 | 1400 |