Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi2689g00030 | ATGGAGGATCAGGCTGTTTTATGTGGCGGGGCTTCTGTTAATGTTGGAAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGCTGTGAAGATGAAGAAGTATTTAAAGAGACTGAGGAGCCAGTGGTGGAAGGGTTGAAGGATGAACTTGATGAATTTTCTGTAAGATTGTTCTTTAAGGGGTTGTCAATAGCAGGGTTTGAAAATTCAAGTTCTGGGTTTTCTGGAATTGGAGTGTTCATGGAAACATCATCTAGTCTTCCAGCTATACGGGTGCAGAAAAAACTTGACTTTTATGAAGAGGAACCAGTAGCTGACTACTTGGCACTCATGGATGGCTTGCTGAAAGCTGTGCAGAACAAGATTCGCCGGGTTTATGCTTTCACAGATTCTGAGTTGTTGTACGATCAGATAACATTTGAGAAAAAATTGGAGATGCCACTCTTGATAGCACTGAGAGAAAGGATTCTGGAACATGCCAATAATTTTGAAGCTTTTGTTCTGAAGCTTGTACCCAGTACTGATCTTGAGCAGCCACTGCAGTTGGCCAAAGTAGCTATTGGACTTGTCACTTACCCTGTAAATGGTGAGAGATTACTTCAGAACTGTTCTATTTGTTGTGAAGACAAGCCAGTGCCAATGATGATGACCTTGAAATGTTCACACACATTCTGTTCCCATTGCTTGAGGGCCTATGCCGATGGTAAAGTACAATCTTGTCAAGTCCCTATAAGATGCCCTCAACCAGGATGCAAATGTTACATCTCTGCAGCTGAGTGCAGGTCTTTTCTTCCATTCACCTCCTTTAAAGCTTTGGAGAAAGCCCTTGCAGAAGCAAATATTCTCCATTCAGATAGAGTTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCGTCGTCCATGTTTATCAGATACAGCCAGTTCATCTAGTCAGTCAGAGAATTCTTGTGTTGAATGTCCTGTTTGCCAGAGGTTTATCTGCGTGGAGTGTGAGGTTCCTTGGCATTCTTCTATGAGCTGTGAAGAATACCAGAATCTGCCAGAGGATGAGAGAGATGCTTCTGACATTACCTTGCATCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTACAATGATCGAGCTTACTCAAGGTTGTTACCACATGACATGCCGGTGTGGTCATGAGTTCTGCTATTCTTGTGGTGCGGAATACAGGGATGGCCAACAGACATGTCAATGTGCATTTTGGGATGAAAACAACTCTGAAGACTCGGTGACAAACTCTCTTCAAGAATCAGAACAATTGGCATGCGAAACTTTCAATTCTTTCTCCATGATCATGGATGATACATACTCAGACCAAGAATGGTCTCAGTTTGCACTTATAGAAAGGTTCCTAGATGGTGCTTTTAGTCTCAGTGACCATAATCCATACCAATCTCCTCCTCCCCAATGTACAGACTCCTATGTAGACCCTTTGAAGGATCTTCATCAGCTTCCATGGCTCGAGACATTTGTGTCTGTGATAAGTGACAACTACTATGAAGATTATATTCAATGA | 1557 | 0.4245 | MEDQAVLCGGASVNVGREEEEDEFCSCCEDEEVFKETEEPVVEGLKDELDEFSVRLFFKGLSIAGFENSSSGFSGIGVFMETSSSLPAIRVQKKLDFYEEEPVADYLALMDGLLKAVQNKIRRVYAFTDSELLYDQITFEKKLEMPLLIALRERILEHANNFEAFVLKLVPSTDLEQPLQLAKVAIGLVTYPVNGERLLQNCSICCEDKPVPMMMTLKCSHTFCSHCLRAYADGKVQSCQVPIRCPQPGCKCYISAAECRSFLPFTSFKALEKALAEANILHSDRVYCPFPNCSVLLDRRPCLSDTASSSSQSENSCVECPVCQRFICVECEVPWHSSMSCEEYQNLPEDERDASDITLHRLAQNKRWKRCQQCRTMIELTQGCYHMTCRCGHEFCYSCGAEYRDGQQTCQCAFWDENNSEDSVTNSLQESEQLACETFNSFSMIMDDTYSDQEWSQFALIERFLDGAFSLSDHNPYQSPPPQCTDSYVDPLKDLHQLPWLETFVSVISDNYYEDYIQ | 518 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi2689g00030 | 518 | SUPERFAMILY | Ribonuclease H-like | 71 | 172 | IPR012337 | - | |
Gabi2689g00030 | 518 | FunFam | RBR-type E3 ubiquitin transferase | 339 | 465 | - | - | |
Gabi2689g00030 | 518 | SUPERFAMILY | RING/U-box | 354 | 418 | - | - | |
Gabi2689g00030 | 518 | FunFam | RBR-type E3 ubiquitin transferase | 54 | 189 | - | - | |
Gabi2689g00030 | 518 | Gene3D | - | 339 | 459 | - | - | |
Gabi2689g00030 | 518 | Pfam | Reverse transcriptase-like | 68 | 172 | IPR002156 | GO:0003676|GO:0004523 | |
Gabi2689g00030 | 518 | ProSiteProfiles | Zinc finger RING-type profile. | 202 | 246 | IPR001841 | - | |
Gabi2689g00030 | 518 | SMART | ibrneu5 | 351 | 410 | IPR002867 | GO:0008270 | |
Gabi2689g00030 | 518 | SMART | ibrneu5 | 269 | 341 | IPR002867 | GO:0008270 | |
Gabi2689g00030 | 518 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 280 | IPR013083 | - | |
Gabi2689g00030 | 518 | SUPERFAMILY | RING/U-box | 201 | 278 | - | - | |
Gabi2689g00030 | 518 | Gene3D | - | 62 | 188 | IPR036397 | GO:0003676 | |
Gabi2689g00030 | 518 | Pfam | IBR domain, a half RING-finger domain | 280 | 341 | IPR002867 | GO:0008270 | |
Gabi2689g00030 | 518 | Pfam | IBR domain, a half RING-finger domain | 361 | 410 | IPR002867 | GO:0008270 | |
Gabi2689g00030 | 518 | FunFam | RBR-type E3 ubiquitin transferase | 198 | 282 | - | - | |
Gabi2689g00030 | 518 | CDD | Rcat_RBR_unk | 367 | 403 | - | - | |
Gabi2689g00030 | 518 | ProSitePatterns | Zinc finger RING-type signature. | 219 | 228 | IPR017907 | - | |
Gabi2689g00030 | 518 | ProSiteProfiles | TRIAD supradomain profile. | 198 | 416 | IPR044066 | - | |
Gabi2689g00030 | 518 | CDD | BRcat_RBR_unk | 283 | 344 | - | - | |
Gabi2689g00030 | 518 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 117 | 460 | IPR031127 | GO:0004842|GO:0016567 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi2689g00030 | Gabi-Chr2689 | 309350 | 316060 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi2689g00030 | 31 | 401 | C3H Transcription Factor Family | AT2G19610 | 26.786 | 4.82e-33 | 128 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi2689g00030 | - | - | gmx:100783040 | 853.973 |