Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2689g00030 ATGGAGGATCAGGCTGTTTTATGTGGCGGGGCTTCTGTTAATGTTGGAAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGCTGTGAAGATGAAGAAGTATTTAAAGAGACTGAGGAGCCAGTGGTGGAAGGGTTGAAGGATGAACTTGATGAATTTTCTGTAAGATTGTTCTTTAAGGGGTTGTCAATAGCAGGGTTTGAAAATTCAAGTTCTGGGTTTTCTGGAATTGGAGTGTTCATGGAAACATCATCTAGTCTTCCAGCTATACGGGTGCAGAAAAAACTTGACTTTTATGAAGAGGAACCAGTAGCTGACTACTTGGCACTCATGGATGGCTTGCTGAAAGCTGTGCAGAACAAGATTCGCCGGGTTTATGCTTTCACAGATTCTGAGTTGTTGTACGATCAGATAACATTTGAGAAAAAATTGGAGATGCCACTCTTGATAGCACTGAGAGAAAGGATTCTGGAACATGCCAATAATTTTGAAGCTTTTGTTCTGAAGCTTGTACCCAGTACTGATCTTGAGCAGCCACTGCAGTTGGCCAAAGTAGCTATTGGACTTGTCACTTACCCTGTAAATGGTGAGAGATTACTTCAGAACTGTTCTATTTGTTGTGAAGACAAGCCAGTGCCAATGATGATGACCTTGAAATGTTCACACACATTCTGTTCCCATTGCTTGAGGGCCTATGCCGATGGTAAAGTACAATCTTGTCAAGTCCCTATAAGATGCCCTCAACCAGGATGCAAATGTTACATCTCTGCAGCTGAGTGCAGGTCTTTTCTTCCATTCACCTCCTTTAAAGCTTTGGAGAAAGCCCTTGCAGAAGCAAATATTCTCCATTCAGATAGAGTTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCGTCGTCCATGTTTATCAGATACAGCCAGTTCATCTAGTCAGTCAGAGAATTCTTGTGTTGAATGTCCTGTTTGCCAGAGGTTTATCTGCGTGGAGTGTGAGGTTCCTTGGCATTCTTCTATGAGCTGTGAAGAATACCAGAATCTGCCAGAGGATGAGAGAGATGCTTCTGACATTACCTTGCATCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTACAATGATCGAGCTTACTCAAGGTTGTTACCACATGACATGCCGGTGTGGTCATGAGTTCTGCTATTCTTGTGGTGCGGAATACAGGGATGGCCAACAGACATGTCAATGTGCATTTTGGGATGAAAACAACTCTGAAGACTCGGTGACAAACTCTCTTCAAGAATCAGAACAATTGGCATGCGAAACTTTCAATTCTTTCTCCATGATCATGGATGATACATACTCAGACCAAGAATGGTCTCAGTTTGCACTTATAGAAAGGTTCCTAGATGGTGCTTTTAGTCTCAGTGACCATAATCCATACCAATCTCCTCCTCCCCAATGTACAGACTCCTATGTAGACCCTTTGAAGGATCTTCATCAGCTTCCATGGCTCGAGACATTTGTGTCTGTGATAAGTGACAACTACTATGAAGATTATATTCAATGA 1557 0.4245 MEDQAVLCGGASVNVGREEEEDEFCSCCEDEEVFKETEEPVVEGLKDELDEFSVRLFFKGLSIAGFENSSSGFSGIGVFMETSSSLPAIRVQKKLDFYEEEPVADYLALMDGLLKAVQNKIRRVYAFTDSELLYDQITFEKKLEMPLLIALRERILEHANNFEAFVLKLVPSTDLEQPLQLAKVAIGLVTYPVNGERLLQNCSICCEDKPVPMMMTLKCSHTFCSHCLRAYADGKVQSCQVPIRCPQPGCKCYISAAECRSFLPFTSFKALEKALAEANILHSDRVYCPFPNCSVLLDRRPCLSDTASSSSQSENSCVECPVCQRFICVECEVPWHSSMSCEEYQNLPEDERDASDITLHRLAQNKRWKRCQQCRTMIELTQGCYHMTCRCGHEFCYSCGAEYRDGQQTCQCAFWDENNSEDSVTNSLQESEQLACETFNSFSMIMDDTYSDQEWSQFALIERFLDGAFSLSDHNPYQSPPPQCTDSYVDPLKDLHQLPWLETFVSVISDNYYEDYIQ 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2689g00030 518 SUPERFAMILY Ribonuclease H-like 71 172 IPR012337 -
Gabi2689g00030 518 FunFam RBR-type E3 ubiquitin transferase 339 465 - -
Gabi2689g00030 518 SUPERFAMILY RING/U-box 354 418 - -
Gabi2689g00030 518 FunFam RBR-type E3 ubiquitin transferase 54 189 - -
Gabi2689g00030 518 Gene3D - 339 459 - -
Gabi2689g00030 518 Pfam Reverse transcriptase-like 68 172 IPR002156 GO:0003676|GO:0004523
Gabi2689g00030 518 ProSiteProfiles Zinc finger RING-type profile. 202 246 IPR001841 -
Gabi2689g00030 518 SMART ibrneu5 351 410 IPR002867 GO:0008270
Gabi2689g00030 518 SMART ibrneu5 269 341 IPR002867 GO:0008270
Gabi2689g00030 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 280 IPR013083 -
Gabi2689g00030 518 SUPERFAMILY RING/U-box 201 278 - -
Gabi2689g00030 518 Gene3D - 62 188 IPR036397 GO:0003676
Gabi2689g00030 518 Pfam IBR domain, a half RING-finger domain 280 341 IPR002867 GO:0008270
Gabi2689g00030 518 Pfam IBR domain, a half RING-finger domain 361 410 IPR002867 GO:0008270
Gabi2689g00030 518 FunFam RBR-type E3 ubiquitin transferase 198 282 - -
Gabi2689g00030 518 CDD Rcat_RBR_unk 367 403 - -
Gabi2689g00030 518 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Gabi2689g00030 518 ProSiteProfiles TRIAD supradomain profile. 198 416 IPR044066 -
Gabi2689g00030 518 CDD BRcat_RBR_unk 283 344 - -
Gabi2689g00030 518 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 117 460 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2689g00030 Gabi-Chr2689 309350 316060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2689g00030 31 401 C3H Transcription Factor Family AT2G19610 26.786 4.82e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2689g00030 - - gmx:100783040 853.973