Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2689g00022 ATGGCTCTTTCAGCAGAACCCTCATCATCTTTGAGCTCTTCCCATTTATCAAATGGCTCCGTTACTCACAACATATCCTCTTCTTATGGCTCTGATCCTGGACCTAGCCTTGAGGTTATCAGTTTGAGTAAGCTTAGCTCTAATTTGGAGCAGCTTTTGATTGATACTGATTGTGATTATAGTGATGCTGACATCATTGTGGAAGGAATTCCGGTTAGTGTTCATCGATGTATTCTGGCCTCTAGGAGTAAGTTTTTCCATGACTTATTCAAAAGAGAGAAAGGATCATCAGGGAAAGAAGGAAAATTAAAGTATTGCATGAGTGATTTGTTGCCTTTTGGCAAGGTTGGATATGAAGCCTTCCTCATATTTCAAGCCTATGTGTATACCGGTAAACTCAGGCCTTCTCCAATGGAGGTGTCGACATGTGTTGACAATGTGTGTGCTCATGATGCTTGTAGACCTGCTATTAACTTCGCTGTGGAGTTGATGTATGCCTCTTTCATTTTTCAAATACCAGAGTTGGTATCACTTTTCCAGCGACGTCTTCTTAACTTCATAGGAAAGGCTCTTGTGGAAGATGTCATCCCAATCCTCGTGGTTGCCTTCCATTGTCAATTGAGTCAACTTGTCACTCAATGTGTTGACAGGGTGGCACGATCAGACCTTGACCAGATATCAATTGACAAAGAACTTCCCTTTGAGCTCTCAGAAAAAGTTAAATTGCTCCGGCGCAACCCTCAGCAAGATGTTGAAAATGATGATTCTGTAGGGGATACTTTGTCTCTAAAAAGAATCACTAGAATACACAAAGCATTGGACTCAGATGATGTCGAGCTTGTTAAACTTCTTTTAAATGAGTCAGACATTACTCTAGATGAAGCCAATGCTCTCCATTATGCTGCAGCCTACTGTGATCCCAAGGTTGTTTCTGAGGTACTTGGTTTGGGTCTAGCTGATGTCAATCTTCGGAATTCTCGGGGATACACAGTACTTCACATTGCTGCCATGCGTAAGGAGCCTTCCATTATAGTATCCCTTCTTACAAAAGGGGTGTGTGCATCAGATTTAACTTTTGATGGTCAAAGTGCTGTTAGTATTTGTAAGAGGTTGACAAGGCCAAAGGATTATCATGCAAAAACTGAACAGATGAAAGAAACAAACAAAGATCGGATATGCATCGATGTCCTTGAAAGAGAAATGCGGAGAAATCCATTGGCTGGGGATGCCTCTATGTCTTCCCATACAATGGCTGACGATCTCCACATGAAGCTACTATACCTTGAAAACAGAGTGGCATTTGCAAGACTGTTCTTCCCTTCAGAAGCCAAACTAGCCATGGACATTGCACATGCTGAGACAACATCTGAGTTTGCTGGTCTTGCTGCATCAAAAGGTTCAAATGGCAACTTAAGGGAAGTTGATCTCAACGAGACTCCCATAATGCAAAACAAAAGACTTCATTCTAGGATGGAAGCCCTTATGAAAACAGTGGAGATGGGGCGGCGATACTTCCCTCATTGCTCAGAAGTGCTGGATAAGTTCATGGAGGATGACCTGCCTGACTTGTTTTACCTTGAGAAGGGCACCCCAGAAGAGCAGAAAATCAAGAGGATGCGTTTCATGGAGCTTAAAGATGATGTCCACAAAGCTTTCAGCAAAGACAAGGCTGAGTTTAGCCGCTCTGGGATTTCATCTTCATCATCCTCATCATCCCTCAGAGATTCTGTACATTACAAGACTAGAAAAGTTTGA 1755 0.4239 MALSAEPSSSLSSSHLSNGSVTHNISSSYGSDPGPSLEVISLSKLSSNLEQLLIDTDCDYSDADIIVEGIPVSVHRCILASRSKFFHDLFKREKGSSGKEGKLKYCMSDLLPFGKVGYEAFLIFQAYVYTGKLRPSPMEVSTCVDNVCAHDACRPAINFAVELMYASFIFQIPELVSLFQRRLLNFIGKALVEDVIPILVVAFHCQLSQLVTQCVDRVARSDLDQISIDKELPFELSEKVKLLRRNPQQDVENDDSVGDTLSLKRITRIHKALDSDDVELVKLLLNESDITLDEANALHYAAAYCDPKVVSEVLGLGLADVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGVCASDLTFDGQSAVSICKRLTRPKDYHAKTEQMKETNKDRICIDVLEREMRRNPLAGDASMSSHTMADDLHMKLLYLENRVAFARLFFPSEAKLAMDIAHAETTSEFAGLAASKGSNGNLREVDLNETPIMQNKRLHSRMEALMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTPEEQKIKRMRFMELKDDVHKAFSKDKAEFSRSGISSSSSSSSLRDSVHYKTRKV 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2689g00022 584 SUPERFAMILY Ankyrin repeat 262 370 IPR036770 -
Gabi2689g00022 584 SUPERFAMILY POZ domain 50 186 IPR011333 -
Gabi2689g00022 584 FunFam regulatory protein NPR3-like 261 401 - -
Gabi2689g00022 584 Pfam BTB/POZ domain 59 139 IPR000210 GO:0005515
Gabi2689g00022 584 MobiDBLite consensus disorder prediction 559 575 - -
Gabi2689g00022 584 CDD BTB_POZ_NPR_plant 44 187 - -
Gabi2689g00022 584 SMART ANK_2a 327 359 IPR002110 GO:0005515
Gabi2689g00022 584 SMART ANK_2a 293 323 IPR002110 GO:0005515
Gabi2689g00022 584 SMART ANK_2a 264 292 IPR002110 GO:0005515
Gabi2689g00022 584 Gene3D Potassium Channel Kv1.1; Chain A 37 219 IPR011333 -
Gabi2689g00022 584 Pfam NPR1/NIM1 like defence protein C terminal 369 571 IPR021094 -
Gabi2689g00022 584 FunFam Regulatory protein NPR3 35 219 - -
Gabi2689g00022 584 Pfam Ankyrin repeats (3 copies) 270 351 IPR002110 GO:0005515
Gabi2689g00022 584 ProSiteProfiles BTB domain profile. 61 137 IPR000210 GO:0005515
Gabi2689g00022 584 Gene3D - 261 401 IPR036770 -
Gabi2689g00022 584 SMART BTB_4 61 187 IPR000210 GO:0005515
Gabi2689g00022 584 PANTHER REGULATORY PROTEIN NPR3 12 577 IPR044292 GO:0009862|GO:2000022|GO:2000031
Gabi2689g00022 584 MobiDBLite consensus disorder prediction 553 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2689g00022 Gabi-Chr2689 231545 236278 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gabi2689g00022 NPR1_like_C 1.3e-97 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2689g00022 K14508 - gmx:100217338 1004.59