Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2687g00008 ATGGGAGTTCCAGAGAAAGACCCTCTTTCCCAATTGAGTTTGCCACCTGGTTTTCGGTTTTACCCCACCGACGAGGAACTCCTCGTTCAGTATCTATGCCGCAAGGTAGCTGGCCACCATTTCTCACTTCAAATCATTGCTGAAATCGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAGCAAAGCAATCTTCGGCGAGAAAGAATGGTACTTTTTCAGTCCCAGAGACAGGAAATACCCGAACGGGTCCCGACCCAACAGAGTAGCCGGGTCCGGGTACTGGAAAGCCACCGGAACCGATAAAATCATCACCACCGAAGGGAGAAAAGTTGGTATAAAAAAAGCTCTTGTTTTCTACATTGGCAAAGCTCCAAAAGGTACCAAAACTAATTGGATTATGCACGAGTATCGCCTCCTCGACTCTTCCCGAAAGAATGGCAGCGCCAGGCTGGACGATTGGGTTCTGTGTCGGATATACAAGAAGAATTCTGGCTCGCAAAAAGCTGCGTTAAACGGTGGCGTTTCGAGTAGCGGAGAATATACTCAATATAGCAATGGCTCGTCGTCTTCGTCGTCTTCACACCTCGACGATGTTCTGGAATCTTTGCCGGAGATAAACGACAGGTGTTTCGCCCTGCCACGTGTCAACTCGATGAGAACTCTGCTGCTGCAGCAGCAGCAGCAGCAGCAGCACGAGGAGAAGCTCAATCTTCAGAGCCTTATGATGGATTGGTCTAACCCGGTTATGAACTCGGTTTCGGAGTTCGTTTCGGGTAACCAAGGGGTTCAGGGCCAAACTCAGGGGATGGTGAATTATGGTGGTTGTAATGACCTTTATGTCCCTTCGGTCCCGCCGTTGTGCCACGTGGACTCGTCGGTGCCGGGGAAGATGGAGGAGGAGGTTCAGAGCGGTGTCAAAACCCAACGGGTCGAGAATTCTGGGTTTTTTCAGCAGGGTATGAATGAGTTCACGCAGGGATACTCGAACTCGGTGGACCCGTATGGGTTCAGATACCCGGTTCAGCCGGTCGGATTTGGGTTCAGGCAATGA 1053 0.5071 MGVPEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSSRKNGSARLDDWVLCRIYKKNSGSQKAALNGGVSSSGEYTQYSNGSSSSSSSHLDDVLESLPEINDRCFALPRVNSMRTLLLQQQQQQQHEEKLNLQSLMMDWSNPVMNSVSEFVSGNQGVQGQTQGMVNYGGCNDLYVPSVPPLCHVDSSVPGKMEEEVQSGVKTQRVENSGFFQQGMNEFTQGYSNSVDPYGFRYPVQPVGFGFRQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2687g00008 350 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Gabi2687g00008 350 FunFam NAC domain-containing protein 72-like 23 167 - -
Gabi2687g00008 350 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
Gabi2687g00008 350 MobiDBLite consensus disorder prediction 171 196 - -
Gabi2687g00008 350 Gene3D NAC domain 23 166 IPR036093 GO:0003677|GO:0006355
Gabi2687g00008 350 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Gabi2687g00008 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2687g00008 Gabi-Chr2687 236961 238736 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2687g00008 1 223 NAC Transcription Factor Family AT4G27410 73.750 2.37e-122 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2687g00008 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2687g00008 - - gmx:732651 552.362