Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2686g00016 ATGGGTTCTGTTTGTTGTTGTTTGAGTTCTGACAATTTTGAAGATTATGTAAATCCAAGTAGTTCTGTATATAGGAACTGCGTGTGTCTCAGTTGCTTCGTACAGAACCTTTTAAATGTGTATGCATCAATATTCCGAAGAGGGGAAGTGCATTCAATTCCTTCATCTATTCAGGGGCCAGCATCTATGGGTTCTGCTGCATCACTTGATAATTCTCTGTCTGACATGTATCGATCTCCTCCAAGGCCCTTACCTTATGATGCAGAACCCAGATATTTCCGCTCGCCACGTGATGGACTAGTTTCAAGGCGTGAGAAGGGTTCAAGTCATTCGAATGAGGAAACAGAACCTCTAAGAAGTGATGTAGATGTGGATCCAGAATCTTTAAATTCAGGAGACAAATGGAATGAAAGTTCCTGTGAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCACTAAGACTTCCATCATCAAAATATGCAACTGGAGTTGGGCTCATATATTCATCATCAGAAGAGGAGGATATCTGTCCAACCTGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATTTATGAATGGATGGAAAGAAGTGACAACTGTCCAGTTTGTGGAAAGGATTCAGGTACGGGGAAGACGATTGGAGCTGGCGTTGAGTCACAAGGTCTCTACTATCTGATTGCACCACCTTCTCCAGTAGCTTGTTCTCTCACAGAGTCTCCTGAGCTAATTCACAGCCGTCTGGGTCATCCAAACCTCTCCAAGCTTTAG 810 0.4222 MGSVCCCLSSDNFEDYVNPSSSVYRNCVCLSCFVQNLLNVYASIFRRGEVHSIPSSIQGPASMGSAASLDNSLSDMYRSPPRPLPYDAEPRYFRSPRDGLVSRREKGSSHSNEETEPLRSDVDVDPESLNSGDKWNESSCEDGSKEYRSKSSLRLPSSKYATGVGLIYSSSEEEDICPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKDSGTGKTIGAGVESQGLYYLIAPPSPVACSLTESPELIHSRLGHPNLSKL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2686g00016 269 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Gabi2686g00016 269 SUPERFAMILY RING/U-box 172 221 - -
Gabi2686g00016 269 SMART ring_2 177 217 IPR001841 -
Gabi2686g00016 269 MobiDBLite consensus disorder prediction 72 152 - -
Gabi2686g00016 269 CDD RING-H2_AIRP1-like 173 219 - -
Gabi2686g00016 269 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Gabi2686g00016 269 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 64 220 - -
Gabi2686g00016 269 MobiDBLite consensus disorder prediction 91 130 - -
Gabi2686g00016 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 223 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2686g00016 Gabi-Chr2686 250057 258112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2686g00016 1 219 C3H Transcription Factor Family AT5G15790 59.821 3.12e-90 265