Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2686g00015 ATGGGTTCTGTTTGTTGTTGTTTGAGTTCTGACAATTTTGAAGATTATGTAAATCCAAGTAGTTCTGTATATAGGAACTGCGTGTGTCTCAGTTGCTTCGTACAGAACCTTTTAAATGTGTATGCATCAATATTCCGAAGAGGGGAAGTGCATTCAATTCCTTCATCTATTCAGGGGCCAGCATCTATGGGTTCTGCTGCATCACTTGATAATTCTCTGTCTGACATGTATCGATCTCCTCCAAGGCCCTTACCTTATGATGCAGAACCCAGATATTTCCGCTCGCCACGTGATGGACTAGTTTCAAGGCGTGAGAAGGGTTCAAGTCATTCGAATGAGGAAACAGAACCTCTAAGAAGTGATGTAGATGTGGATCCAGAATCTTTAAATTCAGGAGACAAATGGAATGAAAGTTCCTGTGAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCACTAAGACTTCCATCATCAAAATATGCAACTGGAGTTGGGCTCATATATTCATCATCAGAAGAGGAGGATATCTGTCCAACCTGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATTTATGAATGGATGGAAAGAAGTGACAACTGTCCAGTTTGTGGAAAGGTGATGGTATTCGATGAAACGGCTTACTCTTGA 690 0.4043 MGSVCCCLSSDNFEDYVNPSSSVYRNCVCLSCFVQNLLNVYASIFRRGEVHSIPSSIQGPASMGSAASLDNSLSDMYRSPPRPLPYDAEPRYFRSPRDGLVSRREKGSSHSNEETEPLRSDVDVDPESLNSGDKWNESSCEDGSKEYRSKSSLRLPSSKYATGVGLIYSSSEEEDICPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETAYS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2686g00015 229 CDD RING-H2_AIRP1-like 173 221 - -
Gabi2686g00015 229 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Gabi2686g00015 229 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Gabi2686g00015 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 224 IPR013083 -
Gabi2686g00015 229 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 64 225 - -
Gabi2686g00015 229 SMART ring_2 177 217 IPR001841 -
Gabi2686g00015 229 MobiDBLite consensus disorder prediction 72 152 - -
Gabi2686g00015 229 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Gabi2686g00015 229 MobiDBLite consensus disorder prediction 91 130 - -
Gabi2686g00015 229 SUPERFAMILY RING/U-box 172 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2686g00015 Gabi-Chr2686 245226 258112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2686g00015 1 226 C3H Transcription Factor Family AT5G15790 60.173 3.78e-94 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2686g00015 - - gmx:100777068 429.869