Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2686g00014 ATGGGTAGAGGAAGGGTTGAACTAAAGCAGATCGAGAATAAAATCAGTCGCCAAGTAACGTTTTCAAAGAGGAGAACGGGGTTGAAAAAGAAAGCACATGAAATCTCTGTGCTTTGTGATGCTCAAGTAGCATTGATTGTGTTCAACAACAATGGGAAACTTTTTGAGTATTCATCTGAATCCAGCGTCGAAAACATCCTGGAACGATATGAGAGACATGCTCATACAGTCAAACTTGTTGGAGCTGATAATGAATCACAGAGAAACTGGTCCTTGGAATGCTTCAAGCTAACCGGCAAAGTTCAAGTTCTAGAGAGAAACTTAAGGAACTTCGTGGGACATGATCTGGATCCTTTGAGCTTGAGAGATCTTCAGAGTTTAGAGCATCAGCTTGACTCAGCTCTAAAGCGCATCCGAACAAGAAAGAACCAAGTTGTGCATGAATCCATCACTGAGATGCATAAAAAGACAAAGGCATTGCAGGAGAAAAACAACATGCTAGCAAACAAGATTAAGGAGAAAGAGAAGACACTGGCTGAAAATTCACCCTGCTGGCCAGAAACCGTAGGCCAAAGTTCATGTCCTTTACAGCTACAATCGCCACAAAGAATAGTTCCTTGTTTAACACTCAGATTATAA 639 0.4131 MGRGRVELKQIENKISRQVTFSKRRTGLKKKAHEISVLCDAQVALIVFNNNGKLFEYSSESSVENILERYERHAHTVKLVGADNESQRNWSLECFKLTGKVQVLERNLRNFVGHDLDPLSLRDLQSLEHQLDSALKRIRTRKNQVVHESITEMHKKTKALQEKNNMLANKIKEKEKTLAENSPCWPETVGQSSCPLQLQSPQRIVPCLTLRL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2686g00014 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi2686g00014 212 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Gabi2686g00014 212 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2686g00014 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Gabi2686g00014 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2686g00014 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2686g00014 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2686g00014 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2686g00014 212 Coils Coil 124 144 - -
Gabi2686g00014 212 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Gabi2686g00014 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Gabi2686g00014 212 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Gabi2686g00014 212 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gabi2686g00014 212 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2686g00014 212 Coils Coil 157 180 - -
Gabi2686g00014 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2686g00014 Gabi-Chr2686 210237 220037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2686g00014 1 178 MADS-box Gene Family AT1G26310 59.669 2.27e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2686g00014 K-box 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2686g00014 K09264 - gmx:100820188 305.834