Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2684g00003 ATGATTGGAAGTAAAGATCTTCTTCCCAATGGGGTTGACTCTGAGGGTGGAAACTCAAGGACGAAGGAGTCACAGAAGCATGATTTTGGGTATGGCAAGGAAAACACAGAAGAGAAAAAACTGAGTTATCCAGAGAAGGGTATTGGTTTTTTCAAAGATTCAGAGGTGGTTGTGGATGGGTTTCAGTCAATACCCTCAAAAGTTGGGAGTTTTGGGTTGCAAGAGTTGACCCTCAGTTACCTCTGTGATAACCCAAAATTGGACCTTGTTAAGAAAGAGGTTGTTCCTGATAAAAGCTTGACTTTCAAAGGTAAAGAAGTTATCATTTCTGAGAATTCAAATCAAGATGAGAAATGGGTAGAAAGAGATTTTTTGAGTTTGAGTGAAACTAAGGAGAACTCTTCAAAGAGATCCATTGAGGAAGAGGAGGGTGAAAGGGAAAAAAATAGGGGCAAGAAGCAGAAGCTTGAGACACTTAATCTCTCTCTTGCTTTGCCTGATGTGTCACTTTCTCTCACAGCTTCAAACGCTATACAAAATGGTGACCAACCTGTTAGGCCAAAACCTAGCAGGCCATCAACAACTACGCACAATTCATGTTCAAATGATTATACAACAGCTTCACTATCATACTCTTATTCTCACCCCTTCTCACACAACCAAAGTTGCTCACTTACACGTAATTCAACAGAGAATTTTGAGTATTCATTGAGCAAAGATGATCAAATTTGGTATTGTGGGGAGGGGACTAATGGATCAGTTCATAGTAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGGCCAATCATGGTGGTGGTGTTGGCCTTAATTCGTTTATGCAAGGGAATAATAGTCAGTATAAAACTACTAGTTCAGATAACCATTCTTTTTTCCCCTCGGATTTGCCTGCTAGGCCAAGATTTGAAGCTCAGTCAGAGGGCTCAAGGGGAAAGAATTCTGAGCATGTGAGAGGCTTGGAAGTTGTAGATGGTGGGAAAATAATGAACCTTTCTAGACCAGAGAGAATTCTTAGGGAGATTGTTTCTGAGTCTATCCCATCCATGGCATTGACATTTCAGGAGTTTGCTGATGAAGTCATAACATCGATTAAGGAATACTTGAAAAAACTCTTTGAAATGCCAGAGAAGAAAGAGGAATTAGTGAACCTCCAGAACCGGCTTGAGAGAAGATCTGATCTTACCAAAGAAACTCTTTCAAAGTGCCATAAAGGGCAATTAGAGATTTTAGTTGCTATCAAGATGGGGCTTGGAAGTTTCTTATCTGACAAATTTCAATTCTCTGAGATGGTGGAGGTTTTCTTGTATATAAGATGTAGAAATGTGAACTGCAAGAGCTTGCTTCCTATTGATGACTGTGACTGCAAGATTTGCTCTGGAAATAAGGGATTTTGCAGTTCTTGCATGTGTCCTGTTTGTTTGAACTTTGATTGTGCAAATAACACTTGTAGTTGGGTAGGTTGTGATGTTTGTTCTCACTGGTGTCATGCTGCCTGTGGCATTCAGAGGAATCTAATCAAACCTGGGCCTAGCTTGAAGGGTCCTCCAGGGACCTTTGAGATTCAGTTTCATTGTATTAGCTGTGGACATGCTTCTGAAATGTTTGGGTTTGTTAAGGAGGTCTTTGTGTGTTGCGCGAAGGATTGGGGCCTAGAAACCTTGATGAAAGAGCTTGATTGTGTAAGGAAAATTTTCAGGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATATTAAAACCGATGGCATGCTGTTAAAGCTTCAAGCTAAACTGGTATCTCCTTTGGATGCCTGCAATTACATCATCAAGTTTTTCAGCTATGCGGATGGCATGTCAGACTTTCCTGCTTCTGGTATATCTTCAAAGGATTTGTCAGCATCTCAGGCTAACATTACAAAGGACACAGCATCTCTTTCACAATCTCATTCTCTAATACCAAAATATACTTATGACTTGAGCTATTCTAGGTCCAATGATCATCATCAGAAAGACCTCAAAACCTCCCTCTTAAGTGAAGTGAAAAATGAGACTGATTTTCAGTTGGGGAATTTATTAAGGGAAGGTGGGCTTGAAAGCTTGGAGAGCATTGTGAGGATAAAAGAGGCTGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCAAGAAGAGAGGCTGAAGGGTTTCAGAGGATTTTCAGAACAAAGGCTGCACAGATGGAAGAAGAGTATGCTGAGAAGTTTGGCAAACTCTGTCTGCATGAGACAGAGGAAAAAAGGAGGAAGAAATTTGAGGAATTCAATGTCTTAAAAAATTCCCATTTTGATTATGATAAAATGAAAATGAGAATGAAAGATGAGATTGATGGTTTGTTGAAGAGAATGGATGCAACAAAACAGCAATGGTTTTAG 2406 0.4027 MIGSKDLLPNGVDSEGGNSRTKESQKHDFGYGKENTEEKKLSYPEKGIGFFKDSEVVVDGFQSIPSKVGSFGLQELTLSYLCDNPKLDLVKKEVVPDKSLTFKGKEVIISENSNQDEKWVERDFLSLSETKENSSKRSIEEEEGEREKNRGKKQKLETLNLSLALPDVSLSLTASNAIQNGDQPVRPKPSRPSTTTHNSCSNDYTTASLSYSYSHPFSHNQSCSLTRNSTENFEYSLSKDDQIWYCGEGTNGSVHSRFKPIGDGVALANHGGGVGLNSFMQGNNSQYKTTSSDNHSFFPSDLPARPRFEAQSEGSRGKNSEHVRGLEVVDGGKIMNLSRPERILREIVSESIPSMALTFQEFADEVITSIKEYLKKLFEMPEKKEELVNLQNRLERRSDLTKETLSKCHKGQLEILVAIKMGLGSFLSDKFQFSEMVEVFLYIRCRNVNCKSLLPIDDCDCKICSGNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQRNLIKPGPSLKGPPGTFEIQFHCISCGHASEMFGFVKEVFVCCAKDWGLETLMKELDCVRKIFRGSEDRKGKELHIKTDGMLLKLQAKLVSPLDACNYIIKFFSYADGMSDFPASGISSKDLSASQANITKDTASLSQSHSLIPKYTYDLSYSRSNDHHQKDLKTSLLSEVKNETDFQLGNLLREGGLESLESIVRIKEAEARMFQTKADEARREAEGFQRIFRTKAAQMEEEYAEKFGKLCLHETEEKRRKKFEEFNVLKNSHFDYDKMKMRMKDEIDGLLKRMDATKQQWF 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2684g00003 801 MobiDBLite consensus disorder prediction 176 201 - -
Gabi2684g00003 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 697 717 IPR004082 -
Gabi2684g00003 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 358 380 IPR004082 -
Gabi2684g00003 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 482 502 IPR004082 -
Gabi2684g00003 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 397 412 IPR004082 -
Gabi2684g00003 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 736 758 IPR004082 -
Gabi2684g00003 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 555 574 IPR004082 -
Gabi2684g00003 801 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 436 457 IPR004082 -
Gabi2684g00003 801 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 90 800 IPR004082 -
Gabi2684g00003 801 Coils Coil 139 159 - -
Gabi2684g00003 801 MobiDBLite consensus disorder prediction 19 38 - -
Gabi2684g00003 801 MobiDBLite consensus disorder prediction 1 38 - -
Gabi2684g00003 801 Coils Coil 779 799 - -
Gabi2684g00003 801 Pfam Coiled-coil region of Oberon 664 790 IPR032535 -
Gabi2684g00003 801 Pfam PHD - plant homeodomain finger protein 445 569 IPR032881 -
Gabi2684g00003 801 CDD PHD_OBE1_like 475 534 IPR047578 -
Gabi2684g00003 801 Coils Coil 703 723 - -
Gabi2684g00003 801 MobiDBLite consensus disorder prediction 130 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2684g00003 Gabi-Chr2684 13576 17441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2684g00003 367 649 PHD Gene Family AT5G57380 23.549 1.19e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2684g00003 - - gmx:100820216 1191.41