LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2681g00010	ATGTTTTGGTTTGTCCTTGCATCAGTGTATGCCATTGCAGAATTTAATGGAAAGTCCATAGTTATGGCCACAGAGAAGAACTCTATGCATCACAAACAAGGCAGAAGAAAACTAGATGATGTAGCTGGCTCCATTTGCATTGACTGTGGGCTATCTGGAGATCTTAAGTATACTGATGACGAAACTCGGATAGATTACACTTCAGATACAGGGTTCATTGACACTGGAACAAACAAAAACATATCTGTCAAGTTCATTCCTGAAATTGCTCAAAGAACCTTCAAAACTGTGAGAAGCTTTCCTCAGGGTAAAAGGAATTGCTACACACTAAGACATCCAGAAGGCAAAGATACTATTTACTTGATCAGAGCAACTTTCATGTATGGGAACTATGATGAGTTGAATCAGCTGCCACAATTTGATCTTTATATTGGGGTTAATTTATGGGATTCTGTGAGGTTTGACAATTCCACTCATGTGGTAATCAAGGAGATTTTACACGTTCCATCGATGGATAATTTATATGTTTGTTTATTGAATACTGATTTGGGAACTCCTTTTATATCAGCACTGGAGGTGAGGCATTTTGATTATTCCATTTATAGAACCAAGTCTGGACCCTTAGCTTTATATAGACGTTTCGATATTGGCTCAACAACTGATGAAATAGTGAGGTTTGACAAAGATTATTATGATCGAATGTGGTTTCCTTACAACTTACCTGATTGTACACCACTCAATACTTCCTTCACCATTGACTCCTTGAACCATACTAAATATCACCTGCCATCAACAGCAATGAGAACTGCTGTGAGGCCTAAAAATGATAATGATTCACTCGAATTTGAATTTGACACCGGATATCCTACTTCAGAGTCCTATGTTTACATGCACTTTGCTGAAATCGAAGATCTTCAGGAAAATGAAAAGAGGGAATTCGACATTACATTGAATGGAAAATTATGGGCTGAGTCTGTAACTCCTATGTATTTGCACTCAACTACAATAGATAGTGAACAGTCCATTAGGGGAAATAAGCTTATGTTCTCTATGCATAAGAAACCATATTCCACCCATCCTCCCATTCTCAATGCAATGGAGATTTACATTGTTAAAGATTTCTTGCAGGCACCTACAGACCAAGAAGATGTTAAGGCTATCATGGAGATCAAGTCACACTACATGTCAACGTCTTTGTTGGGTAAATCATGGCAAGGAGATCCTTGTGCACCATTAAAATACTCTTGGAACGGTCTCAACTGCAGCAATAATGGATATGATTCACCCAGAATAACTGCACTAAACCTAGCCTCCAGTGCATTGGGTGGCACAATAATTGCCTCATTTTTGGAGCTCAAATTCTTGGAATCCTTGGATTTATCAAACAATAGCTTAACGGGTCCAATGCCTGATTTTTCACAACTGCAATACTTGAAGGCTCTCAATTTATCAGGGAACAAGCTTTCAGGTGAAATTCCTTCACTTCTCAAGGAAAGATCAAATAATGGTTCACTTTTATTGAGTGTGGATGGATATCCGGATCTCTGCCTGATGGCCCCATGCCAAGAGGACAAAAAGAATATTGTCCCACTTGTTGCAGTCATTCTTTCATCAGTGGTCTTTTTAATTGTGCTGGGTACTGCACTGACTATCATTTGGAGATGGAGATGCAACAGAAAACCAGCATCAAAGCAAGCTGTGAGATCAAGCGAAGAAATTGTACTGAAGTCAAATAATAAACAGTTCACGTACTCTCAGATAGTAGCTATTACCAATGACTTTGAGAAAATGATTGGGAAGGGAGGATGTGGAATTGTTTATCACGGTTCCTTAAATAATGGCACACAAGTTGCTGTCAAAATGGTGTTGCCAAAATCACCACAAGGTTCTCAGCAGTTTCAGACTGAGGCTGAACTCTTAATGCGAGTTCATCATAAAAACTTAGCTTCCTTTCTTGGATATTGTAATGACGTTGGACACTCTGCCATCATCTATGAATACATGGCTTATGGGAACATAGAGGAGTATCTATCAGATGCAAAGAGAGAACCATTGAGTTGGAGACACAGGATTCAAATAGCAGTTGATGCTGCTCAAGGACTCGAATACTTGCATCATGGCTGCAAGCCTCCTATAATCCATAGAGACATTAAGACTGCAAACATTTTACTGAACGAGAAAATGCAGGCAAAAGTAGCTGATTTTGGTTTCTCAAAACTTTTCCCAACTGAAAATGAAAGTCATATATTAACTGCTGTTGTTGGCACATTTGGATATCTTGATCCAGAATACTACACATCCAGCAGGCTGACTGAGAAAAGCGATGTTTATAGTTTTGGCATTGTTCTTTTGGAGCTTATTACTGGGCAGCAAGCCATAATAAAAGGTCGTGAGAACACTCACATTGTGAAATGGGTTAGCCACTTTCTTGCAAGAGGAGATATACAACAAATTGTTGATCCAAGGATGCAGGGAGATTTTGATTTTGGCTCTATGTGGAAGGCTGCGGAGGCAGCAATAGCTTGTGTGCCTTCAATTTCCATCCAAAGGCCATCAATGAGTTACATTGTCACGGAACTGAAAGAGTGCTTAGAAATGGAAGCAGCTCGAGAACAAGAGGGCACCAATGAGCAAATTTCGAAATCAAACTCGTTTGAAATGAGTGTTGTTGATCTTGAAGCTGATTATGGCCCGGGTGCAAGATGA	2706	0.3947	MFWFVLASVYAIAEFNGKSIVMATEKNSMHHKQGRRKLDDVAGSICIDCGLSGDLKYTDDETRIDYTSDTGFIDTGTNKNISVKFIPEIAQRTFKTVRSFPQGKRNCYTLRHPEGKDTIYLIRATFMYGNYDELNQLPQFDLYIGVNLWDSVRFDNSTHVVIKEILHVPSMDNLYVCLLNTDLGTPFISALEVRHFDYSIYRTKSGPLALYRRFDIGSTTDEIVRFDKDYYDRMWFPYNLPDCTPLNTSFTIDSLNHTKYHLPSTAMRTAVRPKNDNDSLEFEFDTGYPTSESYVYMHFAEIEDLQENEKREFDITLNGKLWAESVTPMYLHSTTIDSEQSIRGNKLMFSMHKKPYSTHPPILNAMEIYIVKDFLQAPTDQEDVKAIMEIKSHYMSTSLLGKSWQGDPCAPLKYSWNGLNCSNNGYDSPRITALNLASSALGGTIIASFLELKFLESLDLSNNSLTGPMPDFSQLQYLKALNLSGNKLSGEIPSLLKERSNNGSLLLSVDGYPDLCLMAPCQEDKKNIVPLVAVILSSVVFLIVLGTALTIIWRWRCNRKPASKQAVRSSEEIVLKSNNKQFTYSQIVAITNDFEKMIGKGGCGIVYHGSLNNGTQVAVKMVLPKSPQGSQQFQTEAELLMRVHHKNLASFLGYCNDVGHSAIIYEYMAYGNIEEYLSDAKREPLSWRHRIQIAVDAAQGLEYLHHGCKPPIIHRDIKTANILLNEKMQAKVADFGFSKLFPTENESHILTAVVGTFGYLDPEYYTSSRLTEKSDVYSFGIVLLELITGQQAIIKGRENTHIVKWVSHFLARGDIQQIVDPRMQGDFDFGSMWKAAEAAIACVPSISIQRPSMSYIVTELKECLEMEAAREQEGTNEQISKSNSFEMSVVDLEADYGPGAR	901

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2681g00010	901	PANTHER	OS07G0107800 PROTEIN-RELATED	45	867	-	-
	Gabi2681g00010	901	Gene3D	Phosphorylase Kinase; domain 1	574	667	-	-
	Gabi2681g00010	901	Pfam	Leucine rich repeat	429	488	IPR001611	GO:0005515
	Gabi2681g00010	901	FunFam	Leucine-rich repeat receptor-like kinase	382	516	-	-
	Gabi2681g00010	901	Gene3D	Ribonuclease Inhibitor	382	505	IPR032675	-
	Gabi2681g00010	901	Gene3D	Transferase(Phosphotransferase) domain 1	668	889	-	-
	Gabi2681g00010	901	Pfam	Protein tyrosine and serine/threonine kinase	594	806	IPR001245	GO:0004672\|GO:0006468
	Gabi2681g00010	901	Pfam	Malectin-like domain	47	370	IPR024788	-
	Gabi2681g00010	901	ProSiteProfiles	Protein kinase domain profile.	592	901	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2681g00010	901	SMART	serkin_6	592	864	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2681g00010	901	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	668	873	-	-
	Gabi2681g00010	901	CDD	STKc_IRAK	598	862	-	-
	Gabi2681g00010	901	SUPERFAMILY	Protein kinase-like (PK-like)	570	860	IPR011009	-
	Gabi2681g00010	901	PRINTS	Leucine-rich repeat signature	475	488	-	-
	Gabi2681g00010	901	PRINTS	Leucine-rich repeat signature	455	468	-	-
	Gabi2681g00010	901	ProSiteProfiles	Leucine-rich repeat profile.	477	499	IPR001611	GO:0005515
	Gabi2681g00010	901	FunFam	Leucine-rich repeat receptor-like protein kinase	568	667	-	-
	Gabi2681g00010	901	SUPERFAMILY	L domain-like	396	498	-	-
	Gabi2681g00010	901	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	712	724	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2681g00010	Gabi-Chr2681	23525	28061	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2681g00010	37	876	Receptor kinase-like Gene Family	AT2G19210	47.591	0.0	792

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Gabi2681g00010		Malectin_like	2.2e-109	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2681g00010	-		-	gmx:100791717	1478.77