Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2679g00021 ATGTTTCCTTCAGTTTCTGTTACTCCTAGTCTCATGGATCATGAGACAAACCTCAGAGAAAACTATGTCTCACAGCCAATGCATTTGCAAGAAAGCTACTTGAAACCCAACATGAAAGATGCGCTTCCTTTTGGGGCTCCTTCATCACAGGGTTTCTTGCAAGATTTTCACCATATTGATCAGTTTCATTTGAATGGCTCCTCATCCAATCAAGTTTTTGGGGTTCAAACTCCAAATTTTGATCCTTTTGGTAATGTAACCTCTGCAGGTGTACAACCAGAATTGGAAGTTTATGAGTGCAAGCCTTTTGCTGAGAATGGTAGTGTGCATGCTCATGTTATGGATAATTTCCAATACGAAGGTTATGGTTTGAACCTGCCTAGGAGGAATCAACTTGATATGATGGTTGCAAACCAAAGCTATTTGCCCATTAATCCTCCAGAAACCAAGTCTTTGAGTTTTATTGTACCAGATGAAGTCTCATGCATATCCACAGCAAATTATTACAAGAGGGTTGGCTTGAACAAAAATAATAGGGAATTTCCAACCACTAGAAGAACATTCAAAGTTCGGAAGAAGTCCAACATAGTGAAGGGGCAATGGACAGTGGAGGAAGATAGGTTGCTGATTCAAATGGTCGAACAATATGGAGTGAGGAAGTGGTCTCATATCGCTCAAGCTTTGCCTGGAAGAATAGGGAAACAGTGCAGAGAACGATGGCATAACCATTTAAGGCCTGACATTAAGAAGGATATATGGACTGATGAAGAGGACAAGATACTAATCCAAGCACATGCAGATATAGGAAATAAGTGGGCAGAGATTGCAAAAAGATTGCCAGGAAGAACTGAAAACTCAATCAAAAACCATTGGAATGCAACCAAGAGAAGGCAATATTCCAAAAGAAAATGTCGCTCAAAGTACCCTAGAGGCTCTCTTCTGCAGGAATATATCAAGAGCTTGAACTTGGACCAAAACCCACCAATAGACTATAGAAAAAGATCTGCTTCTAATGCTTATGCTAATGCTAATGCCAAGGTAAACAACACTAGCACTAGCACTAGCAAGGCAGCACCAACAGCAACCCAGTCCCATCATACTACTGATCAATTTTGTCCCAGTGATCGCTTGGTGCCAAATTATGACTTCAACAATGAGGTCCCAGATTTTTGTTTGGATGATAATTTGTTTGAAGAGGGTTGCAGTATTGATTCTCTGCTTGATGATATGCACAGTGCTCCTATTATGAATGAAAAGGATTTTGATGGAAAAATGCATCTTGATGAGGATTACTTTGAGACAGCAATGCCTCATGAGCTGATGGCACCTATGGTGGGAATTGAAGTTAAGAAGGAGTTGGATTTGGTGGAGATGATGTCTCAGGTTCATAATAATATTGATGTGTAA 1407 0.4016 MFPSVSVTPSLMDHETNLRENYVSQPMHLQESYLKPNMKDALPFGAPSSQGFLQDFHHIDQFHLNGSSSNQVFGVQTPNFDPFGNVTSAGVQPELEVYECKPFAENGSVHAHVMDNFQYEGYGLNLPRRNQLDMMVANQSYLPINPPETKSLSFIVPDEVSCISTANYYKRVGLNKNNREFPTTRRTFKVRKKSNIVKGQWTVEEDRLLIQMVEQYGVRKWSHIAQALPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHADIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDQNPPIDYRKRSASNAYANANAKVNNTSTSTSKAAPTATQSHHTTDQFCPSDRLVPNYDFNNEVPDFCLDDNLFEEGCSIDSLLDDMHSAPIMNEKDFDGKMHLDEDYFETAMPHELMAPMVGIEVKKELDLVEMMSQVHNNIDV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2679g00021 468 SUPERFAMILY Homeodomain-like 195 291 IPR009057 -
Gabi2679g00021 468 Gene3D - 252 313 - -
Gabi2679g00021 468 PANTHER MYB PROTEIN-RELATED 177 360 - -
Gabi2679g00021 468 Gene3D - 197 250 - -
Gabi2679g00021 468 FunFam Transcription factor MYB119 251 315 - -
Gabi2679g00021 468 Pfam Myb-like DNA-binding domain 253 292 IPR001005 -
Gabi2679g00021 468 Pfam Myb-like DNA-binding domain 198 244 IPR001005 -
Gabi2679g00021 468 FunFam Transcriptional activator Myb isoform A 197 250 - -
Gabi2679g00021 468 CDD SANT 253 295 IPR001005 -
Gabi2679g00021 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 248 IPR017930 -
Gabi2679g00021 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 249 299 IPR017930 -
Gabi2679g00021 468 MobiDBLite consensus disorder prediction 348 371 - -
Gabi2679g00021 468 ProSiteProfiles Myb-like domain profile. 193 244 IPR001005 -
Gabi2679g00021 468 CDD SANT 201 244 IPR001005 -
Gabi2679g00021 468 ProSiteProfiles Myb-like domain profile. 245 295 IPR001005 -
Gabi2679g00021 468 SMART sant 197 246 IPR001005 -
Gabi2679g00021 468 SMART sant 249 297 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2679g00021 Gabi-Chr2679 207273 209116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2679g00021 131 410 MYB Transcription Factor Family AT4G18770 53.242 1.33e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2679g00021 Myb_DNA-binding 5.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2679g00021 K09422 - gmx:100816653 647.506