Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2678g00002 ATGCAGCGTTTGAAGATGGGGTTCCCTAACTACATCCAAGCATTGGAAGAAGAACGCCGTAAGATTCAGGTGTTCCCCAAAGAGCTTCCTCTTTCCCTCGAGCTGGTCACACAAGCCATTGAAGCCTGTAGACAGCACTTGTCTGGTACTATAAATGATTATAATTCGAATGGGCAATCGGAGTGTTCAGTGCAGACAACATCAACGGAAGGTCCTGTGTTGGAGGAGTTTATCCCAATCAAGAAGAGAGCATCATCCCCTTATTGTGATGAGGATGAGCAACATTCTCATAAGCACAAGGTTTCAAAGGACAATAAGAACAATGATAAGAGGAAATCAGATTGGCTTAAATCTGTGCAGTTATGGAATCCAGATCCCCCAGCTGAGGATGATGTGAGTAGGAACGTGCCTGTGGTGGAATTGAAGAGAAGTGGAAGTGGAGGTGGTGCTTTCCAGCCATTCCACAAAGAAGAAAAAGCTTGCAAGACAAGTGAACCATTAAGTAAAGCACCCTCTTCAACTGCGGCGCCAGTCACCGGGGACAATGCTGGAAAAGGAGAGGAGAAAGAGGGACAGAGAAAGCAGCGCCGGTGCTGGTCACACGAGTTGCATAAGCGCTTCTTGCATGCTCTTCAGCAGCTTGGAGGTCCAGATTCTGCTACACCAAAGCAAATCAGAGAGCTGATGAAGGTTGATGGCCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATACCGTTTACACACTAGAAGACCAAGTCCTGTAGTTCACAACAGTGCCAATCCACAGACAACAACACCCTTTGTCCTTGTGGGGAACATTTTTGTTCAACCACAGGAATATACAGCGGTAGCTACCTCAACAGCATCAGGGGAACTAACCACAGTTGCAGCACCTTCCGGAATTTATGCGCCAGTGGCCACCCATCCTCCGGCTGTTTCACGCACACCACCACCTGCTTCAATTAAGAAGGCACAGTATAAGAAAGTAGAGCTGTTTGAGCATTCAAATTCTGAAGAAAAGGGTAATCACAGTGAAGGGGCTGTTCATTCAAACTCCCCTGCCTCATCAACCTCCACACATACCACCACTACTTCCCCTGGCTATCGAGTTTGA 1119 0.4692 MQRLKMGFPNYIQALEEERRKIQVFPKELPLSLELVTQAIEACRQHLSGTINDYNSNGQSECSVQTTSTEGPVLEEFIPIKKRASSPYCDEDEQHSHKHKVSKDNKNNDKRKSDWLKSVQLWNPDPPAEDDVSRNVPVVELKRSGSGGGAFQPFHKEEKACKTSEPLSKAPSSTAAPVTGDNAGKGEEKEGQRKQRRCWSHELHKRFLHALQQLGGPDSATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPVVHNSANPQTTTPFVLVGNIFVQPQEYTAVATSTASGELTTVAAPSGIYAPVATHPPAVSRTPPPASIKKAQYKKVELFEHSNSEEKGNHSEGAVHSNSPASSTSTHTTTTSPGYRV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2678g00002 372 MobiDBLite consensus disorder prediction 334 372 - -
Gabi2678g00002 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 10 324 IPR044787 GO:0003700|GO:0006355
Gabi2678g00002 372 FunFam Myb family transcription factor 193 251 - -
Gabi2678g00002 372 MobiDBLite consensus disorder prediction 348 372 - -
Gabi2678g00002 372 NCBIfam myb-like DNA-binding domain, SHAQKYF class 194 249 IPR006447 GO:0003677
Gabi2678g00002 372 SUPERFAMILY Homeodomain-like 192 252 IPR009057 -
Gabi2678g00002 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 251 IPR017930 -
Gabi2678g00002 372 Gene3D - 193 251 - -
Gabi2678g00002 372 MobiDBLite consensus disorder prediction 85 112 - -
Gabi2678g00002 372 Pfam Myb-like DNA-binding domain 196 247 IPR001005 -
Gabi2678g00002 372 MobiDBLite consensus disorder prediction 143 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2678g00002 Gabi-Chr2678 28581 30822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2678g00002 11 309 G2-like Transcription Factor Family AT1G68670 49.080 1.32e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi2678g00002 Myb_DNA-binding 3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2678g00002 - - aprc:113872943 577.785